PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01323.80
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 269aa    MW: 29993.3 Da    PI: 9.4515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01323.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08177217954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Jcr4S01323.80 177 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 217
                    699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13169228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-14172226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6178217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-6191222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEIDQLKCAT EDQMEMMMMM DKLPEFYTPY NDVTDLASPV EFPGATTNTN CINSVNAIPH  60
FIDNPQIANS NSPPFVTLPS NMPFASNNNS TTIHEESSQP HFLSNPLPTA RSRGVGEFPA  120
ANSSYSTQSQ KKNSMAAMRE MIFRIAAMQP IHIDPESVKP PKRRNVKISK DPQSVAARHR  180
RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAQAN RPSSAGIGFP  240
VAMSSGSYFP LAKTLSTKCS TIWRCLIKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068336.10.0transcription factor HEC2
TrEMBLA0A067KZW90.0A0A067KZW9_JATCU; Uncharacterized protein
STRINGXP_002510202.11e-112(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-42bHLH family protein