PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01302.70

Common Name

JCGZ_14123, LOC105642714

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 423aa MW: 47276.7 Da PI: 9.2842

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01302.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.2	8.2e-15	249	295	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ Er+RR++iN+++ eL+ llP++ K++Ka++L A+eY+k Lq Jcr4S01302.70 249 VHSLSERKRRHKINKKMRELQALLPNS-----DKVDKASVLDNAIEYLKTLQ 295 5999********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-18	243	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.488	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-17	248	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-12	249	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.06E-14	250	299	No hit	No description
SMART	SM00353	3.3E-15	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009641	Biological Process	shade avoidance
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MIPGLRFGPH QVRGDEIMEL VCENGQILMR GRSTTSSSFT YSFDQYSPQA VGDNQVRKKP 60 KLDEKHENNP ADYFFHGLFG NNINDKHIME SQIVPEYREE NSNTLSPQLH NQSSYQQYEA 120 SVPIRRSMKN GSQSVCSRVV KDWKRNEKLP AQDEAKEMQQ IRQMVNPIEQ TPPDEQSEAF 180 LHINIVQEKA ASASVCSLGA SNDLSYSSLK TITEDMGRMT SENEHAEDQQ VPKPASARAG 240 AKRRPTPRVH SLSERKRRHK INKKMRELQA LLPNSDKVDK ASVLDNAIEY LKTLQLQVQI 300 MSMGSRFWMP QMMLPNAMQQ IHNLAHFSPM GIRMGMGVGS FQNPAVLGFP ARILPMQMSV 360 PQPPFLPFVG GGGSSMLHPS VPVTANSGIA TPMGQIRGNS APLFSLNLKE NSSNKTQSSV 420 ELC

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MIPGLRFGPH QVRGDEIMEL VCENGQILMR GRSTTSSSFT YSFDQYSPQA VGDNQVRKKP  60
KLDEKHENNP ADYFFHGLFG NNINDKHIME SQIVPEYREE NSNTLSPQLH NQSSYQQYEA  120
SVPIRRSMKN GSQSVCSRVV KDWKRNEKLP AQDEAKEMQQ IRQMVNPIEQ TPPDEQSEAF  180
LHINIVQEKA ASASVCSLGA SNDLSYSSLK TITEDMGRMT SENEHAEDQQ VPKPASARAG  240
AKRRPTPRVH SLSERKRRHK INKKMRELQA LLPNSDKVDK ASVLDNAIEY LKTLQLQVQI  300
MSMGSRFWMP QMMLPNAMQQ IHNLAHFSPM GIRMGMGVGS FQNPAVLGFP ARILPMQMSV  360
PQPPFLPFVG GGGSSMLHPS VPVTANSGIA TPMGQIRGNS APLFSLNLKE NSSNKTQSSV  420
ELC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	257	KRRPTPRVHSLSERKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083021.1	0.0	transcription factor PIL1 isoform X1
TrEMBL	A0A067JWU8	0.0	A0A067JWU8_JATCU; Uncharacterized protein
STRING	cassava4.1_005881m	4e-62	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13329	18	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46970.1	1e-35	phytochrome interacting factor 3-like 1

Link Out ? help Back to Top
Entrez Gene	105642714

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]