PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01288.30

Common Name

JCGZ_16109

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WOX

Protein Properties

Length: 217aa MW: 24889 Da PI: 10.0351

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01288.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	79	138	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Jcr4S01288.30 79 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgrygKIEGKNVFYWFQNHKARERQ 138 7***************99************************************97 PP
2	Wus_type_Homeobox	118	4.1e-38	79	140	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq Jcr4S01288.30 79 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGRYGKIEGKNVFYWFQNHKARERQKQ 140 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-13	74	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.187	74	139	IPR001356	Homeobox domain
SMART	SM00389	1.5E-7	76	143	IPR001356	Homeobox domain
CDD	cd00086	6.12E-5	79	140	No hit	No description
Pfam	PF00046	2.9E-19	79	138	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-8	80	138	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MKVHQLARGF WEHEPSLTLG CKRLRPLAPK LSNDTTTTTV TSFDLKSFIR PESGPRKLGS 60 SDDKKDSPQP QVETHPGGTR WNPTQEQIGI LEMLYRGGMR TPNAQQIEQI TAQLGRYGKI 120 EGKNVFYWFQ NHKARERQKQ KRNSLGLSHS PRTPSPITTS ISLETRGEVE REKDSPYKRK 180 CRSWGFESLE LEESRSTCRE EGADRTLELF PLHPEGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068312.1	1e-160	WUSCHEL-related homeobox 4 isoform X2
Swissprot	Q6X7J9	4e-80	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A067KZX1	1e-159	A0A067KZX1_JATCU; Uncharacterized protein
STRING	POPTR_0014s02540.1	1e-131	(Populus trichocarpa)
STRING	XP_002510184.1	1e-131	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-81	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]