PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01284.80
Common NameJCGZ_18065
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 650aa    MW: 71046.9 Da    PI: 6.5047
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01284.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.3e-15319370155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Jcr4S01284.80 319 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 370
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003673.3E-6276287IPR001471AP2/ERF domain
CDDcd000184.90E-25319380No hitNo description
PfamPF008479.0E-10319370IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18319380IPR016177DNA-binding domain
PROSITE profilePS5103219.045320378IPR001471AP2/ERF domain
SMARTSM003801.5E-33320384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-18320379IPR001471AP2/ERF domain
PRINTSPR003673.3E-6360380IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MNNWLGFSLS PQQLPSQSDH HQDHSQTTAS RLGFHSDEIS GTGVSGECFD LTSDSTVPSL  60
NLPAPFGILE AFRNNQSQDW NMKGLSMNPE TAYKTNSDLC MLIGSSCNTQ NLDQNQQPKL  120
ENFLGGHSFA NHENKLATMY NTTGDYMFQD CSLQAANDTT CNGEENNSLN TANNNSNSSI  180
GLSMIKTWLR NQPAPTQQQQ QETKNINGGG AQSLSLSMST GEGNINNNSG GGDHSSSSDN  240
NKQQKTTSSG LDSQTGAIES VPRKSIDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE  300
GQNSKGKARK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA  360
YDIAAIKFRG LNAVTNFDMS RYDVNSILES STLPIGGAAK RLKDVEQAEM ILDTQRTEND  420
NITSHFTDGI SSGYGWPSLA FQQTHHHHNQ PFSMHYPYGQ RLWCKQEQDS DTNNHSLQDL  480
HHQQLQLGNT HNFFQPSILH NLMSMDSSSM EHSSGSNSVI YSNGGDGQGM SYGSNGSSGY  540
AIPMATVISN NNNNGNQNQG NGFGDGEVKA IGYDHQSIFG SSDAYNARNF YYLSQQQSSS  600
SSPGAVKASA YDQGSTCNNW VPTAVPALAP RSNNVAVCHG ASTFTVWNDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085806.10.0AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A067JSP50.0A0A067JSP5_JATCU; Uncharacterized protein
STRINGcassava4.1_002713m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-64AP2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]