PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01265.30
Common NameJCGZ_04085, LOC105633565
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 358aa    MW: 40946.2 Da    PI: 6.8778
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01265.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.21.8e-1247104156
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                    s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g+
  Jcr4S01265.30  47 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWGH 104
                    57*******************99998898888888********************997 PP
2AP251.23e-16146197155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Jcr4S01265.30 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 197
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-1547113IPR016177DNA-binding domain
PfamPF008479.8E-947104IPR001471AP2/ERF domain
SMARTSM003801.9E-1948117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-1348112IPR001471AP2/ERF domain
PROSITE profilePS5103218.53148111IPR001471AP2/ERF domain
PRINTSPR003674.1E-64960IPR001471AP2/ERF domain
CDDcd000183.92E-24146207No hitNo description
SuperFamilySSF541711.05E-17146207IPR016177DNA-binding domain
PfamPF008475.6E-12146197IPR001471AP2/ERF domain
SMARTSM003801.2E-24147211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17147206IPR001471AP2/ERF domain
PROSITE profilePS5103218.334147205IPR001471AP2/ERF domain
PRINTSPR003674.1E-6187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGKLSSQQNQ KSVGNTNITI NNNNNGVMKA KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QGAYDDEEAA AHAYDLAALK YWGHETILNF PLSTYETELK  120
EMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLKPNQNDI NNNNYDPKQP NPNLGTNSST  240
PNPNNQEFGL SFLNQQTNQL PPASETTMAV IEPRPANATS ALGLLLQSSK FKEMMEMTSM  300
TDYPSTPADN QIEPQQCRFP DDIQTYFDCQ DQNTYGEGDD MIFDDLNSFV PQMFQCDF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534744.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-112AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A067KRL40.0A0A067KRL4_JATCU; Uncharacterized protein
STRINGcassava4.1_022021m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-100ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]