PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01242.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 25146.6 Da PI: 6.7559 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.4e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+++Cv+apyf+ eq + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++e++ Jcr4S01242.30 7 SCGACKFLRRKCTSECVFAPYFCYEQaATHFAAVHKVFGASNVSKLLLHLPLQNRSDAAITISYEALARMRDPIYGCVAHIFALQQQIASLQEEIE 102 6***********************99789******************************************************************* PP DUF260 96 llkee 100 l+++ Jcr4S01242.30 103 ILGHQ 107 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.545 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-37 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY EQAATHFAAV HKVFGASNVS KLLLHLPLQN 60 RSDAAITISY EALARMRDPI YGCVAHIFAL QQQIASLQEE IEILGHQMAN LTVGIASRGS 120 SQTISNPNCS SLQDAINMQY FQNQPAAQVN NAGYATGNQA FDSQMNVQLP GYEWEDQNLF 180 CDSHPNSLER LLEVVDQEFS PILRVVGQWE QCKLKLKIGT KKSIFSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091407.1 | 1e-149 | LOB domain-containing protein 33 | ||||
TrEMBL | A0A067LJS2 | 1e-148 | A0A067LJS2_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_027792m | 1e-125 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 3e-61 | LOB domain-containing protein 33 |