PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01220.50

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 741aa MW: 82989.7 Da PI: 8.1697

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01220.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.6	1.1e-34	19	117	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCa+Ck++r+kC +dC+lapyfpa+++++f++vhk+FG+snv+kl+++++ee+r+++++slv+eA +r++dP+ G +g ++k+q++l+ k+++++ Jcr4S01220.50 19 ACASCKHQRKKCGEDCILAPYFPADRSREFQAVHKVFGVSNVMKLVRSVREEDRKTVADSLVWEAFCRQNDPILGPLGEYRKIQEELKLYKNQTQM 114 7*******************************************************************************************9998 PP DUF260 97 lke 99 +++ Jcr4S01220.50 115 VNQ 117 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.65	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-33	19	116	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:4.10.400.10	7.5E-4	212	253	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat
Pfam	PF12999	3.6E-18	221	278	IPR028146	Glucosidase II beta subunit, N-terminal
PROSITE profile	PS51375	5.207	496	531	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	9.153	568	602	IPR002885	Pentatricopeptide repeat
TIGRFAMs	TIGR00756	2.5E-5	571	603	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	7.563	603	633	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	5.02	639	673	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	6.336	674	708	IPR002885	Pentatricopeptide repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042170	Cellular Component	plastid membrane
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MQKRNNSNNN GGTAGAHPAC ASCKHQRKKC GEDCILAPYF PADRSREFQA VHKVFGVSNV 60 MKLVRSVREE DRKTVADSLV WEAFCRQNDP ILGPLGEYRK IQEELKLYKN QTQMVNQNQL 120 VQQQQGMISS AWNGTNKGGG GGGGLANNNN STEKVRRQEK LQPHLQQQQH SITTAGFNQQ 180 PYYLPGHFGS INGKTMDGTL WEDEKYFSSR LIKCKDGSKS FPRDSLNDNF CDCVDGTDEP 240 GTSACPRGKF YCQNLGSKPQ FIFSSHVNDR ICDSWFRCSN LGFMCFSLLL IYHLYHPREQ 300 KTSILVIFFF LVDIIRLQLD TMFPYCCDGS DEYDSGINCP NTCIMGGNLE YKARRFISAT 360 DAKESEDGLL LEDLLHKAKG LKMVIILQGV LLGCVGRVVF QLKMFLLSCA CNSNETTTPS 420 LADTIRSISS VEPTIQSAIE AKAYQKIPDL LISLKEQSFQ NPNPFSFLSN FPLNQRTQIV 480 DEILQSFIPL RPRSYPKLAY SFLLSYTLQN PNPLPLALAI LQSTLRSGLS PEPGIRLLLS 540 SAWLDKRKQS QSVTTILTEM KFIGYYPDCG TCNYIIYCLC AVDQLLEAVK VLKGMGRVGC 600 VPDLESYGIV IGSMCVARKT ADAVEMIKEM VVKLRLNPRQ GTVVKLLAML RANREIWRAV 660 EIIEFLEREG CPVGFESYEL VVEGCLDCKE YILAGKVAIG MTEKGFIPYI KVRQKVVEGL 720 AGAGEWKLAC AVRQRFTELS S

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MQKRNNSNNN GGTAGAHPAC ASCKHQRKKC GEDCILAPYF PADRSREFQA VHKVFGVSNV  60
MKLVRSVREE DRKTVADSLV WEAFCRQNDP ILGPLGEYRK IQEELKLYKN QTQMVNQNQL  120
VQQQQGMISS AWNGTNKGGG GGGGLANNNN STEKVRRQEK LQPHLQQQQH SITTAGFNQQ  180
PYYLPGHFGS INGKTMDGTL WEDEKYFSSR LIKCKDGSKS FPRDSLNDNF CDCVDGTDEP  240
GTSACPRGKF YCQNLGSKPQ FIFSSHVNDR ICDSWFRCSN LGFMCFSLLL IYHLYHPREQ  300
KTSILVIFFF LVDIIRLQLD TMFPYCCDGS DEYDSGINCP NTCIMGGNLE YKARRFISAT  360
DAKESEDGLL LEDLLHKAKG LKMVIILQGV LLGCVGRVVF QLKMFLLSCA CNSNETTTPS  420
LADTIRSISS VEPTIQSAIE AKAYQKIPDL LISLKEQSFQ NPNPFSFLSN FPLNQRTQIV  480
DEILQSFIPL RPRSYPKLAY SFLLSYTLQN PNPLPLALAI LQSTLRSGLS PEPGIRLLLS  540
SAWLDKRKQS QSVTTILTEM KFIGYYPDCG TCNYIIYCLC AVDQLLEAVK VLKGMGRVGC  600
VPDLESYGIV IGSMCVARKT ADAVEMIKEM VVKLRLNPRQ GTVVKLLAML RANREIWRAV  660
EIIEFLEREG CPVGFESYEL VVEGCLDCKE YILAGKVAIG MTEKGFIPYI KVRQKVVEGL  720
AGAGEWKLAC AVRQRFTELS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f0e_B	4e-24	206	343	2	87	Glucosidase 2 subunit beta
5h9o_B	4e-24	206	343	2	87	Glucosidase 2 subunit beta
5h9o_D	4e-24	206	343	2	87	Glucosidase 2 subunit beta
5ied_B	4e-24	206	343	2	87	Glucosidase 2 subunit beta
5iee_B	4e-24	206	343	2	87	Glucosidase 2 subunit beta
5ief_B	4e-24	206	343	2	87	Glucosidase 2 subunit beta
5ieg_B	4e-24	206	343	2	87	Glucosidase 2 subunit beta

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	8e-44	LOB domain-containing protein 2