PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01215.30

Common Name

JCGZ_07197, LOC105637673

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

CPP

Protein Properties

Length: 892aa MW: 97881.1 Da PI: 5.8981

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01215.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.1	2.2e-15	471	509	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag +C++ C C++C+N+ e Jcr4S01215.30 471 CKRCNCKKTKCLKLYCDCFAAGMYCADPCACQGCFNRPE 509 79**********************************876 PP
2	TCR	48.9	1.3e-15	557	595	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeC+++++ Cs eC+Ce+CkN Jcr4S01215.30 557 RHKRGCNCKRSMCLKKYCECYQENVGCSTECRCEGCKNV 595 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	9.6E-16	469	510	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.637	470	597	IPR005172	CRC domain
Pfam	PF03638	4.2E-11	472	507	IPR005172	CRC domain
SMART	SM01114	3.2E-16	557	598	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.9E-11	559	594	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MDSPEPAKTS DITSTVTTIA ATALSDSPSV QESPFTNYVS NLSPIKPVRA PHPVQGYVGV 60 ASPPLVFTSP RIISHRETSF LQRSQLSQIY SAETHANDDG NNKVVDHSDD HLEKSVTYCS 120 RLIADTQKDN DVENSPQDQP GSSSGFVDEF LRDPVDADCA NSQNLVNSNA EQSNDVLQSS 180 VSSSSNSNAV KLKSDDKNYM SLCVHMSQAS HEQVEEDPQG QSTLEIKPIQ VEEVQSSIKQ 240 PSNKFPNIES DLPSDNAPEQ YDDSEIQMVQ ACELYSENLE ATLQGDIQNV AKCDSEASQL 300 QRGFSRRCLQ FEEAQKKIIV NSTSSPNLTK NVTSSGSPAS AADLESLDPS HVGITESSQK 360 KQMINLSRTM TSMFPLRRSG KSPIVASKPS GIGLHLNSIV NALPMGHTAT ASMKSTPIMS 420 FHQVDYNNSS LKLIAPEDRM LEIKASPVVE PLNMLQPLEH QKASSIDGDG CKRCNCKKTK 480 CLKLYCDCFA AGMYCADPCA CQGCFNRPEY EDTVLETRQQ IESRNPLAFA PKVVEHATEA 540 AAVSREDGSR SMSSLARHKR GCNCKRSMCL KKYCECYQEN VGCSTECRCE GCKNVYGRKE 600 EYGMTEEMVS NRVSEERLEG RVDDKLGMVA TNKDLLHAES YDLHNLTPST PSFQHSDHGK 660 DAPKSRLNSS RYAPSPESEI SVLTSHAKSL SSPSNSQHNM IPKRSKEIQE VDSCSQDMDY 720 NIAEMMDQFS PRCNTLADIC DLTPLQNTLT SIASSASSKP RDWSSSSRLQ LCPGSGRLSS 780 GRSLRWRSSP ITPMTRLGEN KNLGHDSDSG LYDILEDDTP EILKEASIPI PSVKASSPNK 840 KRISPPYKRI HDLRSSTSAG LRSGRKFILK AVPSFPPLTP CTDSKDSTNE KQ

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MDSPEPAKTS DITSTVTTIA ATALSDSPSV QESPFTNYVS NLSPIKPVRA PHPVQGYVGV  60
ASPPLVFTSP RIISHRETSF LQRSQLSQIY SAETHANDDG NNKVVDHSDD HLEKSVTYCS  120
RLIADTQKDN DVENSPQDQP GSSSGFVDEF LRDPVDADCA NSQNLVNSNA EQSNDVLQSS  180
VSSSSNSNAV KLKSDDKNYM SLCVHMSQAS HEQVEEDPQG QSTLEIKPIQ VEEVQSSIKQ  240
PSNKFPNIES DLPSDNAPEQ YDDSEIQMVQ ACELYSENLE ATLQGDIQNV AKCDSEASQL  300
QRGFSRRCLQ FEEAQKKIIV NSTSSPNLTK NVTSSGSPAS AADLESLDPS HVGITESSQK  360
KQMINLSRTM TSMFPLRRSG KSPIVASKPS GIGLHLNSIV NALPMGHTAT ASMKSTPIMS  420
FHQVDYNNSS LKLIAPEDRM LEIKASPVVE PLNMLQPLEH QKASSIDGDG CKRCNCKKTK  480
CLKLYCDCFA AGMYCADPCA CQGCFNRPEY EDTVLETRQQ IESRNPLAFA PKVVEHATEA  540
AAVSREDGSR SMSSLARHKR GCNCKRSMCL KKYCECYQEN VGCSTECRCE GCKNVYGRKE  600
EYGMTEEMVS NRVSEERLEG RVDDKLGMVA TNKDLLHAES YDLHNLTPST PSFQHSDHGK  660
DAPKSRLNSS RYAPSPESEI SVLTSHAKSL SSPSNSQHNM IPKRSKEIQE VDSCSQDMDY  720
NIAEMMDQFS PRCNTLADIC DLTPLQNTLT SIASSASSKP RDWSSSSRLQ LCPGSGRLSS  780
GRSLRWRSSP ITPMTRLGEN KNLGHDSDSG LYDILEDDTP EILKEASIPI PSVKASSPNK  840
KRISPPYKRI HDLRSSTSAG LRSGRKFILK AVPSFPPLTP CTDSKDSTNE KQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-17	474	595	14	121	Protein lin-54 homolog
5fd3_B	2e-17	474	595	14	121	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076620.1	0.0	CRC domain-containing protein TSO1 isoform X1
TrEMBL	A0A067KBM5	0.0	A0A067KBM5_JATCU; Uncharacterized protein
STRING	cassava4.1_029190m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-61	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Entrez Gene	105637673

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]