PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01188.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 1750aa MW: 191979 Da PI: 5.7531 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.4e-08 | 927 | 968 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e+++ + G++ +++Ia+ + ++t +c+++++k Jcr4S01188.20 927 PWTLEEREIFISKLTTIGKD-FRKIASFLD-HKTTADCVEFYYK 968 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 31.9 | 3.2e-10 | 1140 | 1180 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++ I+r++ +R++ qck ++ Jcr4S01188.20 1140 DWTDEEKSIFIRAVSSYGKD-FAMISRCVR-TRSRDQCKVFFS 1180 6*****************99.*********.********8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.68E-13 | 911 | 971 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.052 | 923 | 974 | IPR017884 | SANT domain |
SMART | SM00717 | 4.0E-7 | 924 | 972 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-5 | 927 | 968 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.572 | 1136 | 1187 | IPR017884 | SANT domain |
SMART | SM00717 | 9.7E-9 | 1137 | 1185 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-10 | 1139 | 1187 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-8 | 1140 | 1180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-6 | 1140 | 1181 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.00E-7 | 1141 | 1179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1750 aa Download sequence Send to blast |
MPPERLPWDR KEFFKDRKPD RSTPRWRESS SSHYGSSRDF SRWGGSNEFR RPPVGFLRQM 60 EEILLGIIPL ITAIHKVAIS GLSKIFGDML MSGVHSNLXS GTYLLSMVSR GGWHLFAEES 120 SRGYAPFRSN DRILEDKNYR PSVSRGDGKY GRNSRDNRGS FSSQRDWKAH SWEMSNGSPS 180 TPGRLHDAAN DQRSVDDMLT YPPSHSRSEL GNKWEHLHPK DQHDNIKAAG VSAVGTGQRG 240 DRESSLDWKP LKWDRSGSLS SRGSGFSHSS SSKSIGGGDS SEGKADMQLK SASIVQSPSG 300 DAAACVTSAP SEDMSSRKKP RLNWGEGLAK YEKKKVEGPE MNVIKDEPVI YCINIEPIHS 360 QSSNLVDKSP RVLGLSDCAS PATPSSVACS SPGVEEKTLG KGVNVDNDVG NLCGSPSFGS 420 QTNNEGLSFN LEVLDATSIS NLGASLVELL QSDDSSSVDS SFVRSTLINK LHMLKGDISK 480 ALEVTESEID SLESELKLLK FEPGSMYPGP AASSFFQAVN DAKPCSEQGA VSNDIPRSSP 540 LHVMASGSGQ VENSSLDDGV LEEVNVAIKD DDVDSPGTAT SKFVEPLSVV KMVSSSDMVK 600 LDHCSGDIGV LRIQTMALKP CVPYTNKEDD NCAACGDVSM LIESKDVVPF PSDVSFAEDN 660 LCNLILAANK ESANRASEEL STLLPRDQCK VDVSEVSNAA LWKADALIKE KFAMRKRFLR 720 FKDRVVTLKF KAFQHLWKED MRLLSVRKYR AKSQKKYELS LRTTHSGCQK NRSSIRTRFS 780 SPDSLENLIQ KMSFMFGILF DMHLKLVWSL DLVIEFLCAV MECQMHDCSA GAHCMWPSEY 840 DVEFDYALGL VMLSSRVGNL SLVPTTEMLN FTSKLLSVSQ NKLYRNALKM PALILDKKER 900 MVSRFVSSNG LVEDPCAVEK ERAMINPWTL EEREIFISKL TTIGKDFRKI ASFLDHKTTA 960 DCVEFYYKNH KSDCFEKTKK SKKVKSSTNY LMSSGKNWNR EMNAASLDIL GAASVIAADA 1020 DNSMGNRQMC SGRIYYGGYC ESKIPHGNDG NLDRSSNFDV LENERETAAA DVLAGICGSM 1080 SSEAMSSCIT TSVDPGEGCR EWKSQKVDSV KKRPSTSDVT QNVDEDTSSD ESCGEMDPSD 1140 WTDEEKSIFI RAVSSYGKDF AMISRCVRTR SRDQCKVFFS KARKCLGLDS IHPAPGNLGT 1200 PVSDDANGGG SDTEDGCALE TGSVICSDKL GSKTDEDLPL PVIDAKHEKS NAAERENVTA 1260 DLNNPKESNV ARSLEQNDSK DEISFVSDAC KMGDKSELAF EIDTHQSEVG QAQEISNESV 1320 NSESKRDKPI EHSTSVGEPM YVDAADPGPL NPVSGIELKV IAEVAANGSA NHVEQKEVLL 1380 PENNSNFSVN VENIHHVSGE FDSVAESPTV SLPQENNIAS GAPMLQDTVS IQCERMHTHE 1440 NRDGQGKESG SGDDHLQHPP GKSLVNCSES LQILRGYPLQ IPTKKEMNGD ISCGLLSEVQ 1500 KSFSTSDYYL QKCNSSSKTQ SSLPELPLLS KHAEHGNDHS RDHSRSLSDT EKPCRNVIIL 1560 AFENVPVKSY GFWDGNKIQT GFSSLPEYFL AKYPAAFSNY HVSSSKMEQQ ALQAAVKCND 1620 RNLNGVSVLP PREVSGSNGV VDYQMYKSHD NSKVQPFSVD MKQRQDIFSE IQRRNGFEAI 1680 SSLQQQGRGV VGMNVVGRAG ILVGGSCTGV SDPVAALKMH YAKTEQFSGQ NGAAIIREEE 1740 SWRSKGDIGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020539487.1 | 0.0 | uncharacterized protein LOC105645502 isoform X1 | ||||
TrEMBL | A0A067K1T6 | 0.0 | A0A067K1T6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_030376m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4986 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-99 | MYB family protein |