PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01174.60
Common NameJCGZ_26804, LOC105630155
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 434aa    MW: 48168 Da    PI: 6.8822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01174.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-10233280455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Jcr4S01174.60 233 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 280
                    8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.09E-10227284No hitNo description
SuperFamilySSF474596.54E-17227298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17229296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618229279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-7233280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9235285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MNRALLPEML HCTDMTVLER QRARFKWQQE QQQQNPVQIE QESFNFGDLS GVFQLQQQQQ  60
GFQGDLGEVV TRSVKPDPGL IDNGWPDLVA FGSACGYGNS NGSGFGTNYG ISRTSSCPPA  120
VAAAAVADAA AVASRKLSSG VGRESLKKRK ADKVQNNTKV AAEDDSRVDK RIKGCAEEGE  180
SKITDKTNNK TNSSKNINKE NSAETSKDNS KVTEIQKPDY IHVRARRGQA TDSHSLAERV  240
RREKISERMK YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN  300
IDNLFAKENF PACVTNFPTI GMSSDMTNPA YLQFNPVQQQ QQHQQQQQLV TCCGLDIGIN  360
NPSDIVLRRT ISAPISMPEM FVDSSCFTQI QPSSTWDADL QNLYNVAFDQ SRSTSFPTQP  420
FTGTIEPSNL KMEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067264.10.0transcription factor bHLH63
TrEMBLA0A067L0210.0A0A067L021_JATCU; Uncharacterized protein
STRINGcassava4.1_007858m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-62cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]