PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01159.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Nin-like

Protein Properties

Length: 943aa MW: 105428 Da PI: 6.0844

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01159.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	628	679	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Jcr4S01159.30 628 AEKAITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 679 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.643	618	699	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-25	632	679	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.89E-23	841	932	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-21	851	931	No hit	No description
PROSITE profile	PS51745	26.074	851	934	IPR000270	PB1 domain
SMART	SM00666	1.2E-22	851	934	IPR000270	PB1 domain
Pfam	PF00564	6.9E-17	853	932	IPR000270	PB1 domain
CDD	cd06407	1.41E-37	853	932	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MEDSILSPGT MLAAHADSAM DFDDMDELLL DGCWLETIDG SEFFNPSPHN CAPLIDSSFL 60 WPTSENNDGD LVSRPSQKSN QQDERMSMLP RNSPLNESQS SSPVITQTIG QDMSSVARWG 120 NDADEGSEVS RRWWIGPKAK TPVRDRLIRA LGYINDFSKD KDVLIQIWVP VNEGGRRVLT 180 TQDQHFALVP NCQRLANYRD ISVNYQFSTE KDSKDMMGLP GRVFLGKVPE WTPDVRFFRS 240 DEYPRVGHAQ LYDVCGTLAL PVFEQGTRTC LGVIEVVTTA QKIKYRPELE TVCKALEGSY 300 YILILRMLLS SSIVTSEVDL QSSEVPIGQN VKVCDMSYEA ALSEIHEVLR SACETHKLPL 360 GQIWVPCIQQ GKRGCRHSDE NYYRCVSTVD HACYVRETGM QAFHEACSEH HLLKGQGVAG 420 EAFLTNQPCF SSDITSYRKT EYPLSHHARM FGLHAAVAIR LRSVHTGKAD FALEFFLPVD 480 CTDPEKQKDM LTSLSTIIQQ VCQSLRVVTD RELEAETGPV SEVVLPSYGR PRREDMLRVM 540 HYSESYAGDN SSLTASLTGI QQSGSVVLSY EKENQKVPID EKSMEYRISR EDYNLKRSIE 600 CGVDSEVAEG SLSSVCMGKT AERKRSKAEK AITLQVLRQY FAGSLKDAAK SIGVCPTTLK 660 RICRQHGIKR WPSRKIKKVG HSLQKLQLVI DSVQGASGAL QIGSFYTNFP ELASQKLSSS 720 PFSASKQSDH LEQSSIQTDG GTFSSQVAAP KSPSSSCSQS SSSSHSCSSG LQQNPSVFSI 780 PTSEDHIPGE NSSNGVLKRV RSDAELHASS QEEQNMLPRS QSHIPLREQP NSGNLPPLPK 840 SSSRISHEGD AQRIKVTYGN EKIRFRMPYN WKRKDLLQEI ARRFFIDDIN RYDLKYLDDD 900 NEWVLLTCDD DLEECIDVCQ SSENSTIKLS LQISHLMDGF SRS

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MEDSILSPGT MLAAHADSAM DFDDMDELLL DGCWLETIDG SEFFNPSPHN CAPLIDSSFL  60
WPTSENNDGD LVSRPSQKSN QQDERMSMLP RNSPLNESQS SSPVITQTIG QDMSSVARWG  120
NDADEGSEVS RRWWIGPKAK TPVRDRLIRA LGYINDFSKD KDVLIQIWVP VNEGGRRVLT  180
TQDQHFALVP NCQRLANYRD ISVNYQFSTE KDSKDMMGLP GRVFLGKVPE WTPDVRFFRS  240
DEYPRVGHAQ LYDVCGTLAL PVFEQGTRTC LGVIEVVTTA QKIKYRPELE TVCKALEGSY  300
YILILRMLLS SSIVTSEVDL QSSEVPIGQN VKVCDMSYEA ALSEIHEVLR SACETHKLPL  360
GQIWVPCIQQ GKRGCRHSDE NYYRCVSTVD HACYVRETGM QAFHEACSEH HLLKGQGVAG  420
EAFLTNQPCF SSDITSYRKT EYPLSHHARM FGLHAAVAIR LRSVHTGKAD FALEFFLPVD  480
CTDPEKQKDM LTSLSTIIQQ VCQSLRVVTD RELEAETGPV SEVVLPSYGR PRREDMLRVM  540
HYSESYAGDN SSLTASLTGI QQSGSVVLSY EKENQKVPID EKSMEYRISR EDYNLKRSIE  600
CGVDSEVAEG SLSSVCMGKT AERKRSKAEK AITLQVLRQY FAGSLKDAAK SIGVCPTTLK  660
RICRQHGIKR WPSRKIKKVG HSLQKLQLVI DSVQGASGAL QIGSFYTNFP ELASQKLSSS  720
PFSASKQSDH LEQSSIQTDG GTFSSQVAAP KSPSSSCSQS SSSSHSCSSG LQQNPSVFSI  780
PTSEDHIPGE NSSNGVLKRV RSDAELHASS QEEQNMLPRS QSHIPLREQP NSGNLPPLPK  840
SSSRISHEGD AQRIKVTYGN EKIRFRMPYN WKRKDLLQEI ARRFFIDDIN RYDLKYLDDD  900
NEWVLLTCDD DLEECIDVCQ SSENSTIKLS LQISHLMDGF SRS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073646.1	0.0	protein NLP4
Refseq	XP_020535419.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	B9R8N5	0.0	B9R8N5_RICCO; Uncharacterized protein
STRING	XP_002510678.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein