PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01144.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WOX | ||||||||
Protein Properties | Length: 246aa MW: 28357.1 Da PI: 8.2751 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.3e-20 | 11 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Leel+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Jcr4S01144.40 11 SRWCPTPEQLMILEELYRNgIRTPNASQIQRITAHLslygKIEGKNVFYWFQNHKARDRQ 70 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 120.7 | 6.1e-39 | 9 | 71 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+PtpeQ++iLeely++G+rtPn+++iqrita+L+ yGkie+kNVfyWFQN+kaR+rqk Jcr4S01144.40 9 SSSRWCPTPEQLMILEELYRNGIRTPNASQIQRITAHLSLYGKIEGKNVFYWFQNHKARDRQK 71 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.252 | 6 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-11 | 7 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-6 | 8 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.9E-18 | 11 | 70 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-7 | 11 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.59E-5 | 12 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSPSSTTSSS SRWCPTPEQL MILEELYRNG IRTPNASQIQ RITAHLSLYG KIEGKNVFYW 60 FQNHKARDRQ KLRRKLIKQL QQPQQQLFYP YHDHQLHQNM SNYHHHHHHH LLGSFFDSPP 120 PTATASSSAF LSYHDTAGFL PQGGLEMMNH PWKVEIPQNI QMENSMMRIY GQDWMMMMEG 180 GPTLPQQDLL KHLNFSPITT TNLKEESTGT LSASNNSSEI ITFLPLASLS LCKPEAAYPY 240 KWDTST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012065128.1 | 1e-132 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A067LAA9 | 1e-131 | A0A067LAA9_JATCU; Uncharacterized protein | ||||
STRING | XP_009354530.1 | 1e-62 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 2e-33 | WOX family protein |