PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01138.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 908aa    MW: 100430 Da    PI: 6.5086
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01138.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82e-23150255199
                    EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                    f+k+lt sd++++g +++p++ ae+            +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Jcr4S01138.10 150 FCKTLTASDTSTHGGFSVPRRAAEKVfppfgiasdfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 241
                    99*********************************8544443..48************************************************.. PP

                    SSSEE..EEEEE-S CS
             B3  86 grsefelvvkvfrk 99 
                    ++++ +l+++++r+
  Jcr4S01138.10 242 WNEKNQLLLGIRRA 255
                    8899999****997 PP
2Auxin_resp121.27.9e-40280363183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Jcr4S01138.10 280 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 363
                    79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-46134283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-39143269IPR015300DNA-binding pseudobarrel domain
CDDcd100173.78E-21149254No hitNo description
SMARTSM010194.5E-24150256IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21150256IPR003340B3 DNA binding domain
PfamPF023627.7E-22150255IPR003340B3 DNA binding domain
PfamPF065071.0E-34280363IPR010525Auxin response factor
SuperFamilySSF542777.19E-5792868No hitNo description
PROSITE profilePS5174519.817799885IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MRLASAGFNP QTQEALAAES YNSVDTDTGI FFPLFSAWEK RVLNSELWHA CAGPLVSLPA  60
VGSRVVYFPQ GHSEQVAAST NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM  120
TLQPLSPQEQ KDTYLPAELG TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPFG  180
IASDFSQQPP AQELIARDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF  240
IWNEKNQLLL GIRRANRPQT VMPSSVLSSD SMHLGLLAAA AHAAATNSRF TIFYNPRASP  300
SEFVIPLTKY VKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR  360
SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KSTLVHLDCP RSMCLLCFRM  420
KDDDLGMNSP LMWLRGDGDR GIQSMNFQGL GVTPWMQPRV DASMLGLQTD MYHAMAAAAL  480
QEMRAIDPSK PSNTSLLQFQ QHVNLPSRTA ALMQPQMLQS SQPQQAFLQS VQENQHQPQA  540
QTQTQSHLLQ QQLQHQHSLS TQQQQQPLPQ QQQLVEHQQI QNVVSSISQF ASASQSQSPP  600
LQAISSLCQQ QSFSDSNGNP VTSSVVSPLH SLMGSFSQDE TSHLMNMPRT NPLMTSSAWP  660
SKRAAVEPLI SSGAPQCVLP QVEQLGPPQA NISHSSVSLP PFPGRGCSLD QEGADPQSHL  720
LFGVNIEPSS LLLQSGMSGL RGVGSDSDST TIPFSSSNYM STTGSDFSLN PAMTPSSCID  780
ESGFLQSPEN VGQVNPPSRT FVKVYKSGSF GRSLDITKFS SYNELRSELA RMFGLEGQLE  840
DPLRSGWQLV FVDRENDVLL LGDDPLAGIC EQRVVHQNTI TTRSAADGQT WPRASELSPN  900
SEAFKWQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1603638444388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072176.10.0auxin response factor 6 isoform X1
RefseqXP_012072177.10.0auxin response factor 6 isoform X2
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A067KP610.0A0A067KP61_JATCU; Auxin response factor
STRINGcassava4.1_001154m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]