PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01136.60

Common Name

JCGZ_18301, LOC105641998

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 459aa MW: 50646.6 Da PI: 6.4571

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01136.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.6e-10	176	213	5	39
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 k rr+++NReAAr+sR+RKka++++Le+ + ++Le Jcr4S01136.60 176 KTLRRLAQNREAARKSRLRKKAYVQQLENsrlRLAQLE 213 788*************************8333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.8E-4	172	225	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.37	174	218	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-6	176	214	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.80E-22	176	226	No hit	No description
SuperFamily	SSF57959	3.21E-6	176	219	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.3E-7	178	215	No hit	No description
PROSITE pattern	PS00036	0	179	194	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.7E-31	258	331	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MQSFKAAAAA ASHTISNPEM YCHSSFFLRA EDNSRNQTRF ADLGELDQSA PAFTHDDAVD 60 LSRSSMFSLK SGNVAVLSNN LHYDSALNTS IGSAEIATTG TGCLDTGQYM YQKGTTIGSS 120 LGNGHSIENW GDSAVADNSQ QTDTSTDVDT DDRNQHGTIV GVDSIDQSKR RTGDQKTLRR 180 LAQNREAARK SRLRKKAYVQ QLENSRLRLA QLEQELQRAR QQGIFIPAGF SGDHGAGNGA 240 VAFDMEYARW LDEHHRLIND LRSAVNSHMA DNELRLVVDA VMAHYDEIFQ LKSIGTKADV 300 FHMLSGMWKT PAERCFMWLG GFRSSELLKI LGNHLEPLTD QQLMGICNLQ QSSQQAEDAL 360 SQGMEALQQT LVDTLSSTSL GPAGSGNVAD YMGQMAIAMG KLATLENFLH QADLLRQQTL 420 QQMHRILTTR QAARALLVIS DYTSRLRALS SLWLARPRD

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MQSFKAAAAA ASHTISNPEM YCHSSFFLRA EDNSRNQTRF ADLGELDQSA PAFTHDDAVD  60
LSRSSMFSLK SGNVAVLSNN LHYDSALNTS IGSAEIATTG TGCLDTGQYM YQKGTTIGSS  120
LGNGHSIENW GDSAVADNSQ QTDTSTDVDT DDRNQHGTIV GVDSIDQSKR RTGDQKTLRR  180
LAQNREAARK SRLRKKAYVQ QLENSRLRLA QLEQELQRAR QQGIFIPAGF SGDHGAGNGA  240
VAFDMEYARW LDEHHRLIND LRSAVNSHMA DNELRLVVDA VMAHYDEIFQ LKSIGTKADV  300
FHMLSGMWKT PAERCFMWLG GFRSSELLKI LGNHLEPLTD QQLMGICNLQ QSSQQAEDAL  360
SQGMEALQQT LVDTLSSTSL GPAGSGNVAD YMGQMAIAMG KLATLENFLH QADLLRQQTL  420
QQMHRILTTR QAARALLVIS DYTSRLRALS SLWLARPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082055.1	0.0	transcription factor TGA2.3 isoform X2
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A067KAU1	0.0	A0A067KAU1_JATCU; Uncharacterized protein
STRING	cassava4.1_007351m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-154	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	105641998

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]