PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01124.70

Common Name

JCGZ_01365, LOC105647054

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 750aa MW: 87265 Da PI: 7.0957

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01124.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.2e-27	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+++++++eHnHel p Jcr4S01124.70 28 SFYKEYAKSVGFGTAKLSSRRSRASREFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRSNGKWYIYSFVKEHNHELLP 114 5**************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-24	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-30	227	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.557	508	544	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.9E-7	510	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-7	519	546	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MDSCVVTGGT ILEPRDDMEF DSHEAAYSFY KEYAKSVGFG TAKLSSRRSR ASREFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSNGKWY IYSFVKEHNH ELLPAQVHFF 120 RSHRNIDPLK NDARIRRRKN LTAVSKLFGA YQNVDCLEGY MRNQHDKGRN LVLEAGDAQI 180 LLEFFMHMQE QNPKFFYAVD LNEEHRLRNL FWVDAKGMED YNNFGDVVCF DTTYFTNKYK 240 IPLVLFIGVN HHIQPTLLGS ALIADETVYT FVWLMQTWFM AMGEQAPRVI LTDQNNAIKA 300 AIAAVFPQTR HCFCLWHILE KIPRQLEYLN PWHDNFMVKF NKCIFKSWTE EQFEKRWWKL 360 LDKFNLREVE WVQSLYEDRK YWVPTFLRDV SFAGLCTVLR SESVNSSFDK YVHWETSMRD 420 FIEQYKLILE DRYEEEAKAD FDAWHETPEL KSPSPFEKQM SLVYTHQIFR KFQFEVLGAA 480 ACHLKKEESE DETITTYSVK DFEDNQNYVV EWNESKSEIC CLCRSFEYKG YLCRHAIVVL 540 QMSGVFRIPP KYVLQRWTNA ALSRHPISER LDEVQTKVRR YNDLCRRAII LGEEGSLSEE 600 SYNIALTAIK EALRQCASLN NTVENGVGHT ALVSIEDENQ CSTYSKDVVP DPHLTSANKA 660 PRRVEAGKEK ENNENNTFRK GKQVSQPGAS SIGVQDGFHL VEICDLGPTQ AHNVVPTQLQ 720 HVVPTVFHSM TSTQFHNMAP SHLPETRLPR

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MDSCVVTGGT ILEPRDDMEF DSHEAAYSFY KEYAKSVGFG TAKLSSRRSR ASREFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSNGKWY IYSFVKEHNH ELLPAQVHFF  120
RSHRNIDPLK NDARIRRRKN LTAVSKLFGA YQNVDCLEGY MRNQHDKGRN LVLEAGDAQI  180
LLEFFMHMQE QNPKFFYAVD LNEEHRLRNL FWVDAKGMED YNNFGDVVCF DTTYFTNKYK  240
IPLVLFIGVN HHIQPTLLGS ALIADETVYT FVWLMQTWFM AMGEQAPRVI LTDQNNAIKA  300
AIAAVFPQTR HCFCLWHILE KIPRQLEYLN PWHDNFMVKF NKCIFKSWTE EQFEKRWWKL  360
LDKFNLREVE WVQSLYEDRK YWVPTFLRDV SFAGLCTVLR SESVNSSFDK YVHWETSMRD  420
FIEQYKLILE DRYEEEAKAD FDAWHETPEL KSPSPFEKQM SLVYTHQIFR KFQFEVLGAA  480
ACHLKKEESE DETITTYSVK DFEDNQNYVV EWNESKSEIC CLCRSFEYKG YLCRHAIVVL  540
QMSGVFRIPP KYVLQRWTNA ALSRHPISER LDEVQTKVRR YNDLCRRAII LGEEGSLSEE  600
SYNIALTAIK EALRQCASLN NTVENGVGHT ALVSIEDENQ CSTYSKDVVP DPHLTSANKA  660
PRRVEAGKEK ENNENNTFRK GKQVSQPGAS SIGVQDGFHL VEICDLGPTQ AHNVVPTQLQ  720
HVVPTVFHSM TSTQFHNMAP SHLPETRLPR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088428.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_020540485.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A067LJM5	0.0	A0A067LJM5_JATCU; Uncharacterized protein
STRING	POPTR_0003s22300.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Entrez Gene	105647054

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]