PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01122.80
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRF
Protein Properties Length: 457aa    MW: 49609.5 Da    PI: 8.2095
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01122.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC758.1e-24172215144
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                    d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  Jcr4S01122.80 172 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 215
                    79***************************************987 PP
2QLQ61.52.3e-21110145237
            QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                    +FTaaQ+q+L++Q ++yKy++a++P+PpeLl +i+k
  Jcr4S01122.80 110 PFTAAQWQELERQTMIYKYMMASVPIPPELLIPITK 145
                    9********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-13109145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.156110145IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.6E-16110143IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.402172216IPR014977WRC domain
PfamPF088791.4E-19173215IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAHELKTVKP DGKRNFVRIL KGELQLKSAM LGWVLRMQDK ESCGVISSPS SSSSSSTSCC  60
CSGGGFDGGG PMFYGRSNGV ACFGDIYDVV VGGSSSGGEM NPSSMNVAVP FTAAQWQELE  120
RQTMIYKYMM ASVPIPPELL IPITKTQSNP PSSQSHALKG SLELGISGCN SDPEPWRCKR  180
TDGKKWRCSR DVAPDQKYCE RHSHKSRPRS RKPVELHTDS MAQLLNQKSH FPNQTNSHNL  240
SIFRSPTVSA AASYDQSRNL EWFLKGETVP VASNSNQEWR YLKDGERVYN YRQGQLDSNS  300
YLNMNLRGGH PLQAHRLNEN CSLLLSPKST SLEANVNPSS QETRHFFDAW SSAVRESSNN  360
GGIGNECCVS SGEKLLPLSS LTLSMAGGVQ TNQDNGNEQA ASFGMMGQEK MSHGSWMCSP  420
PGGPLAEALC LGISIGAKAD SNLASSHGSS YGINNKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085416e-39DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086620.10.0growth-regulating factor 8
TrEMBLA0A067JZ150.0A0A067JZ15_JATCU; Uncharacterized protein
STRINGXP_002518921.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.13e-42growth-regulating factor 8