PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01116.40
Common NameJCGZ_18668, LOC105641739
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 296aa    MW: 33833.2 Da    PI: 6.438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01116.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-1393144155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h  +Er+RR+++N+ ++ Lr+++P++   + ++ + a+i+  A++++k+L+
  Jcr4S01116.40  93 QRMTHITVERNRRKQMNDYLAVLRRMMPPS---YVQRGDQASIVGGAINFVKELE 144
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-1191148No hitNo description
SuperFamilySSF474597.85E-1692157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.74892143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-1393160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1093144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MALETVVLQQ DLFGTYGPWI HAFSLQEAEA EDLMRPNVKE WDTNSSSQEN CPAGEGFFCS  60
GGFSPAEVPI TSSGQQKRKR SRNFKNQEEV EHQRMTHITV ERNRRKQMND YLAVLRRMMP  120
PSYVQRGDQA SIVGGAINFV KELEQHLQSL QAHKKMKKES ETDDYSSLFS DFFSFPQYST  180
RSTFAADHHQ QDQSMAKRQS RFAEIEVTMI ENHANLKILL RRHPKQLLKM VVGLSSLSLI  240
IVHLNVTTVG HMVLYSLSIK VEDECQLTSV NEIAAAVYDM VGRIQEEDTS NFSYDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193104RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081726.10.0transcription factor bHLH96
SwissprotQ9C7T45e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A067K3Z50.0A0A067K3Z5_JATCU; Uncharacterized protein
STRINGcassava4.1_025549m1e-139(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]