PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01102.100 | ||||||||
Common Name | JCGZ_12234, LOC105639567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | TCP | ||||||||
Protein Properties | Length: 338aa MW: 37264.8 Da PI: 6.517 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.5 | 1.4e-35 | 20 | 110 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ + Jcr4S01102.100 20 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwnptangnmetdR---------------N 99 79**************************************************************765543333322221...............1 PP TCP 83 snsssg....k 89 + s++ + Jcr4S01102.100 100 DGSNEMriaaE 110 11111122211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-31 | 20 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.754 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MKGTGGEIVQ VQGGHIVKST GRKDRHSKVY TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD 60 RPSKAVDWLI KKAKSSIDKL AELPPWNPTA NGNMETDRND GSNEMRIAAE QSESSGYSFQ 120 LHRQLGDNPN NDSSFITTTI DPDVVIPDTM KSLFPTSSNT SSMNFQGYTT DIISRTTNHT 180 QDLGLSLHSF QDQGHTTSND ENIFAGSGPV GYEANFQRMV DWSNNTNTEN RTANGFAFNP 240 PTMSTQQALL GQDSAFSQRG PLQSSFMQSF RAWNDLTMAS AATDHHRTQD ISQSFIFGSR 300 FASEGLPGAG FSIPARIHGE EEQSVVTDRP SSSPNSQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079039.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-76 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A067K9Y1 | 0.0 | A0A067K9Y1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_011082m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 6e-79 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105639567 |