PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01095.40

Common Name

JCGZ_25182

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 443aa MW: 51307.6 Da PI: 7.0372

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01095.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.7	8.4e-25	118	214	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li+a+++++e+++++ +kk++W+ +sk+m+ergf++s +qC++k+++lnkrykk++++ +++ ++e++++ +++ + Jcr4S01095.40 118 KWTDKMVRLLITAVSYIGEDMSSDGdggvrrklailQKKGKWKLISKVMAERGFHVSRQQCEDKFNDLNKRYKKLNDMLGRGtSCEVVENPALLVH 213 7*******************87556777888999********************************************56899888877766 PP trihelix 85 l 85 + Jcr4S01095.40 214 I 214 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-22	116	241	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MEGNLSRGCM LPGGSPFGGL DLEGAVRIHH QTQYPHAIHN QQRPIHRQGS SVHPSIHEGF 60 PLTIGALNNS DQTISKTNYN KGEKMKNSAS DEDEPSYTED DGNGHSEGKK GLPWQRVKWT 120 DKMVRLLITA VSYIGEDMSS DGDGGVRRKL AILQKKGKWK LISKVMAERG FHVSRQQCED 180 KFNDLNKRYK KLNDMLGRGT SCEVVENPAL LVHIDYLTEK EKDDVRKILS SKHLFYEEMC 240 SYHNSNRLHL PHDPALQHSL QLALRSKDDH DNDDIQRNQK YDLDEDDQEV ETDDHDEFEE 300 KHPSHGNDRG IYGVLGGSMK RLRHGRGCKD SCFWNPSQDG NKGSYPHLQI AQVDMNQMST 360 ESTKAAWLHK QWMESQTLQL EEQKLQIQLE MMELEKQRFK WKRFSRKRDH ELEKLRVENE 420 RMKLENERIA LELKRKEMGI VFN

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MEGNLSRGCM LPGGSPFGGL DLEGAVRIHH QTQYPHAIHN QQRPIHRQGS SVHPSIHEGF  60
PLTIGALNNS DQTISKTNYN KGEKMKNSAS DEDEPSYTED DGNGHSEGKK GLPWQRVKWT  120
DKMVRLLITA VSYIGEDMSS DGDGGVRRKL AILQKKGKWK LISKVMAERG FHVSRQQCED  180
KFNDLNKRYK KLNDMLGRGT SCEVVENPAL LVHIDYLTEK EKDDVRKILS SKHLFYEEMC  240
SYHNSNRLHL PHDPALQHSL QLALRSKDDH DNDDIQRNQK YDLDEDDQEV ETDDHDEFEE  300
KHPSHGNDRG IYGVLGGSMK RLRHGRGCKD SCFWNPSQDG NKGSYPHLQI AQVDMNQMST  360
ESTKAAWLHK QWMESQTLQL EEQKLQIQLE MMELEKQRFK WKRFSRKRDH ELEKLRVENE  420
RMKLENERIA LELKRKEMGI VFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012066019.1	0.0	uncharacterized protein LOC105629112
TrEMBL	A0A067L3E8	0.0	A0A067L3E8_JATCU; Uncharacterized protein
STRING	cassava4.1_022469m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-154	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]