PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01095.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 623aa    MW: 68805.7 Da    PI: 7.1684
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01095.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.41.1e-2951135187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++ke++ ++  ++ +t+++fdqlea
  Jcr4S01095.30  51 RWPRQETLALLKIRSDMDVSFRDASVKGPLWEEVSRKLAELGYNRSAKKCKEKFENVYKYHKRTKESRTGK--QEGKTYRFFDQLEA 135
                    8********************************************************************96..55557*******85 PP

2trihelix107.21.1e-33442527187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++ ev+aLi++r++++++++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  Jcr4S01095.30 442 RWPRVEVQALIKLRTNLDSKYQENGPKGPLWEEISAGMRKLGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 527
                    8********************************************************************97.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.5E-448110IPR001005SANT/Myb domain
PfamPF138371.6E-1950135No hitNo description
PROSITE profilePS500907.07350108IPR017877Myb-like domain
CDDcd122032.66E-2550115No hitNo description
PRINTSPR012172.0E-9142154No hitNo description
PRINTSPR012172.0E-9158174No hitNo description
PRINTSPR012172.0E-9226247No hitNo description
PRINTSPR012172.0E-9368393No hitNo description
PROSITE profilePS500907.271435499IPR017877Myb-like domain
SMARTSM007170.0011439501IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-4440498IPR009057Homeodomain-like
CDDcd122031.26E-29441506No hitNo description
PfamPF138377.7E-23441528No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MLGDSSSSVL ATTTAAAAAT AGGGDEDKGG NGGGVGVGGG DDGDRSFGGN RWPRQETLAL  60
LKIRSDMDVS FRDASVKGPL WEEVSRKLAE LGYNRSAKKC KEKFENVYKY HKRTKESRTG  120
KQEGKTYRFF DQLEAFEHHP LSFSSSQPQP QPQPPSQPPQ PKPQAPAVTT IAMPIVNHPH  180
TLSTVPSTSI ATGTTTTAAT ATLATHVSHH HHLQGIVTTG INLTIPSVQP TNPTVLPSAQ  240
ATNPIQSLSP DLFSNSTSSS STSSDVELQG RRKRKRKWKD FFERLMKEVV HKQEDMQRKF  300
LEAIEKREHD RIVREESWRM QEMARINRER EILAQERSIA AAKDAAVMAF LQKLSEQQNP  360
GQVLNIPPPV QPPQPPPSHP QPQPPPQPVI PTPTPASAPA PAPQPLPITP VASTSPLVQT  420
VTTLDTKSDN GDQTLAQASS SRWPRVEVQA LIKLRTNLDS KYQENGPKGP LWEEISAGMR  480
KLGYNRSAKR CKEKWENINK YFKKVKESNK RRPEDSKTCP YFHQLDALYK EKHKTCDGIG  540
SSSSNIQLKP ENSVPLMVRP EQQWPPAPSQ HGVDTVMEDL ESDDHQNHQD DDDKDNDDDD  600
DDDDEAGGYE IVPNRPTSMS STG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275RRKRKR
2270276RRKRKRK
3271276RKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3157821e-50JN315782.1 Populus tomentosa SANT DNA-binding domain-containing protein (GT2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066018.10.0trihelix transcription factor GT-2 isoform X2
TrEMBLA0A067LEQ40.0A0A067LEQ4_JATCU; Uncharacterized protein
STRINGcassava4.1_030224m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-68Trihelix family protein