PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01095.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | Trihelix | ||||||||
Protein Properties | Length: 623aa MW: 68805.7 Da PI: 7.1684 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.4 | 1.1e-29 | 51 | 135 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++ke++ ++ ++ +t+++fdqlea Jcr4S01095.30 51 RWPRQETLALLKIRSDMDVSFRDASVKGPLWEEVSRKLAELGYNRSAKKCKEKFENVYKYHKRTKESRTGK--QEGKTYRFFDQLEA 135 8********************************************************************96..55557*******85 PP | |||||||
2 | trihelix | 107.2 | 1.1e-33 | 442 | 527 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++ ev+aLi++r++++++++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a Jcr4S01095.30 442 RWPRVEVQALIKLRTNLDSKYQENGPKGPLWEEISAGMRKLGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 527 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.5E-4 | 48 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.6E-19 | 50 | 135 | No hit | No description |
PROSITE profile | PS50090 | 7.073 | 50 | 108 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.66E-25 | 50 | 115 | No hit | No description |
PRINTS | PR01217 | 2.0E-9 | 142 | 154 | No hit | No description |
PRINTS | PR01217 | 2.0E-9 | 158 | 174 | No hit | No description |
PRINTS | PR01217 | 2.0E-9 | 226 | 247 | No hit | No description |
PRINTS | PR01217 | 2.0E-9 | 368 | 393 | No hit | No description |
PROSITE profile | PS50090 | 7.271 | 435 | 499 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0011 | 439 | 501 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-4 | 440 | 498 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.26E-29 | 441 | 506 | No hit | No description |
Pfam | PF13837 | 7.7E-23 | 441 | 528 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MLGDSSSSVL ATTTAAAAAT AGGGDEDKGG NGGGVGVGGG DDGDRSFGGN RWPRQETLAL 60 LKIRSDMDVS FRDASVKGPL WEEVSRKLAE LGYNRSAKKC KEKFENVYKY HKRTKESRTG 120 KQEGKTYRFF DQLEAFEHHP LSFSSSQPQP QPQPPSQPPQ PKPQAPAVTT IAMPIVNHPH 180 TLSTVPSTSI ATGTTTTAAT ATLATHVSHH HHLQGIVTTG INLTIPSVQP TNPTVLPSAQ 240 ATNPIQSLSP DLFSNSTSSS STSSDVELQG RRKRKRKWKD FFERLMKEVV HKQEDMQRKF 300 LEAIEKREHD RIVREESWRM QEMARINRER EILAQERSIA AAKDAAVMAF LQKLSEQQNP 360 GQVLNIPPPV QPPQPPPSHP QPQPPPQPVI PTPTPASAPA PAPQPLPITP VASTSPLVQT 420 VTTLDTKSDN GDQTLAQASS SRWPRVEVQA LIKLRTNLDS KYQENGPKGP LWEEISAGMR 480 KLGYNRSAKR CKEKWENINK YFKKVKESNK RRPEDSKTCP YFHQLDALYK EKHKTCDGIG 540 SSSSNIQLKP ENSVPLMVRP EQQWPPAPSQ HGVDTVMEDL ESDDHQNHQD DDDKDNDDDD 600 DDDDEAGGYE IVPNRPTSMS STG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 275 | RRKRKR |
2 | 270 | 276 | RRKRKRK |
3 | 271 | 276 | RKRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN315782 | 1e-50 | JN315782.1 Populus tomentosa SANT DNA-binding domain-containing protein (GT2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012066018.1 | 0.0 | trihelix transcription factor GT-2 isoform X2 | ||||
TrEMBL | A0A067LEQ4 | 0.0 | A0A067LEQ4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_030224m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 3e-68 | Trihelix family protein |