PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01066.40

Common Name

JCGZ_20918, LOC105628427

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Nin-like

Protein Properties

Length: 984aa MW: 108107 Da PI: 5.2225

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01066.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.1e-29	600	650	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Jcr4S01066.40 600 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	589	670	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	602	650	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.5E-24	881	964	No hit	No description
SuperFamily	SSF54277	5.23E-23	881	967	No hit	No description
PROSITE profile	PS51745	23.564	885	967	IPR000270	PB1 domain
SMART	SM00666	1.9E-23	885	967	IPR000270	PB1 domain
CDD	cd06407	1.41E-31	886	966	No hit	No description
Pfam	PF00564	5.1E-18	886	966	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
MENPFSSNEK GISYFASPRA QADSMVPPDG GTRNSIPEDV FNNFSEFMNM DTYAGWCNSP 60 SAADQMFSSY GFSSFQSTPC ASFDALNIPE HNSSTFLVGG DAFNDAGTYY SCGDKMVIQQ 120 STSQFVYPSD SVGADDSGAK QSDGAHRQRF ISDMAEIAKP VGLSLDEKML RALSMLKETA 180 GGGILAQVWV PIRRGEQYIL STFEQPYLLD QALAGYREVS RTYTFSAEMK PDLPLGLPGR 240 VFISKVPEWT SNVIYYSNTE YLRVKHALNH KVQGSIALPI FEPLDMSCCA VLELVTVKEK 300 PDFDSEMENV CYALQAVNLR TTAPPRLLTQ TLSRNQRAAL AEITDVLRAV CYAHSLPLAL 360 TWIPCNYAEE AVDEIVKVRV KDGHSRSTGK SVLCIEGTAC YVNDREMQGF VHACLEHYIE 420 EGQGIAGKAV QSNHPFFFPD VKAYDITEYP LVHHARKYGL NAAVAIRLRS TYTGDDDYIL 480 EFFLPVNIKG SSEQQLLLNN LSSTMQRICK SLRTVSDAEL ERGGGSTVGF QKGTVPSFSP 540 MLVSTRSCQP TDTVSHLNLA DRITFDASSS KNDRMESDGT HEQMMDGPRR QPEKKRSTSE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV 660 LDSVQGVEGG LKFDPTTGGF VAAGSIIQDS DHQKSFAFHD KQLPAGNSES ANEDAVSVPP 720 APCIDGDNST VKVEEDEFCI DTSRGLMMKS SIPVIDYSED SRSVATDAGI CQEAGLGCRR 780 WSCLENSSAL AKGRKWGLNI VSMKLENSDT HITSRSSCSL AAAESDTKIE GDNGTVDHNQ 840 HTCSSMTDSS NGSGSIMHGS ASSSPSFEGE KQSNVITGYE DSGQKITVKA TYKEDTIRFK 900 FDPFMGCFQL YEEVAKRFKL QNGTFQLKYL DDEREWVMLV SDSDLQECVE ILDYIGAHTV 960 KFLVRDTPLT MGSSGSSNCF LGGS

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

MENPFSSNEK GISYFASPRA QADSMVPPDG GTRNSIPEDV FNNFSEFMNM DTYAGWCNSP  60
SAADQMFSSY GFSSFQSTPC ASFDALNIPE HNSSTFLVGG DAFNDAGTYY SCGDKMVIQQ  120
STSQFVYPSD SVGADDSGAK QSDGAHRQRF ISDMAEIAKP VGLSLDEKML RALSMLKETA  180
GGGILAQVWV PIRRGEQYIL STFEQPYLLD QALAGYREVS RTYTFSAEMK PDLPLGLPGR  240
VFISKVPEWT SNVIYYSNTE YLRVKHALNH KVQGSIALPI FEPLDMSCCA VLELVTVKEK  300
PDFDSEMENV CYALQAVNLR TTAPPRLLTQ TLSRNQRAAL AEITDVLRAV CYAHSLPLAL  360
TWIPCNYAEE AVDEIVKVRV KDGHSRSTGK SVLCIEGTAC YVNDREMQGF VHACLEHYIE  420
EGQGIAGKAV QSNHPFFFPD VKAYDITEYP LVHHARKYGL NAAVAIRLRS TYTGDDDYIL  480
EFFLPVNIKG SSEQQLLLNN LSSTMQRICK SLRTVSDAEL ERGGGSTVGF QKGTVPSFSP  540
MLVSTRSCQP TDTVSHLNLA DRITFDASSS KNDRMESDGT HEQMMDGPRR QPEKKRSTSE  600
KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV  660
LDSVQGVEGG LKFDPTTGGF VAAGSIIQDS DHQKSFAFHD KQLPAGNSES ANEDAVSVPP  720
APCIDGDNST VKVEEDEFCI DTSRGLMMKS SIPVIDYSED SRSVATDAGI CQEAGLGCRR  780
WSCLENSSAL AKGRKWGLNI VSMKLENSDT HITSRSSCSL AAAESDTKIE GDNGTVDHNQ  840
HTCSSMTDSS NGSGSIMHGS ASSSPSFEGE KQSNVITGYE DSGQKITVKA TYKEDTIRFK  900
FDPFMGCFQL YEEVAKRFKL QNGTFQLKYL DDEREWVMLV SDSDLQECVE ILDYIGAHTV  960
KFLVRDTPLT MGSSGSSNCF LGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065227.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A067L9J4	0.0	A0A067L9J4_JATCU; Uncharacterized protein
STRING	cassava4.1_000984m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Entrez Gene	105628427

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]