PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01064.10

Common Name

JCGZ_04857

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 401aa MW: 44452.3 Da PI: 7.9551

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01064.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.9e-05	296	328	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq Jcr4S01064.10 296 DRITALQQIVSPF-----GKTDTASVLLEAIQYIKFLQ 328 6788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.048	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-9	293	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-10	293	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.20E-5	296	332	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
GVGSNGELQN SQDVGENLLD ALSSKSSAIS SGIFEPACDY LKKMDSNWEF THSPSFNSFD 60 KQINSFSSSS DQNLIETKLS NLVSNWSIAP PDPGLINRFD PITCNISLSS SSSLGHYSQP 120 QTYSDSASCD NRSNEFLSCY GQDIKVENDQ HRHVEMPGYL FRRSFNSSNG VGYHIGHNNS 180 SVAADNSKYY YGVLPDNNTC ISSRYFLDGV AFNGRFNKPF IDVQGHKPCF KSSNLSEYRK 240 QGLQTSVPTG RGQGNTSEGK KKRSEEASEI VQKKPKHESS TVSSVKMQAP KVKLGDRITA 300 LQQIVSPFGK TDTASVLLEA IQYIKFLQEQ VQLLSNPYMK TNSHKDPWGS LEKKLDKGDG 360 KVDLRGRGLC LVPISCTPQV YHENTGSDYW TPTYRSGCLY R

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

GVGSNGELQN SQDVGENLLD ALSSKSSAIS SGIFEPACDY LKKMDSNWEF THSPSFNSFD  60
KQINSFSSSS DQNLIETKLS NLVSNWSIAP PDPGLINRFD PITCNISLSS SSSLGHYSQP  120
QTYSDSASCD NRSNEFLSCY GQDIKVENDQ HRHVEMPGYL FRRSFNSSNG VGYHIGHNNS  180
SVAADNSKYY YGVLPDNNTC ISSRYFLDGV AFNGRFNKPF IDVQGHKPCF KSSNLSEYRK  240
QGLQTSVPTG RGQGNTSEGK KKRSEEASEI VQKKPKHESS TVSSVKMQAP KVKLGDRITA  300
LQQIVSPFGK TDTASVLLEA IQYIKFLQEQ VQLLSNPYMK TNSHKDPWGS LEKKLDKGDG  360
KVDLRGRGLC LVPISCTPQV YHENTGSDYW TPTYRSGCLY R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072425.1	0.0	transcription factor bHLH111
TrEMBL	A0A067L2D1	0.0	A0A067L2D1_JATCU; Uncharacterized protein
STRING	cassava4.1_005583m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	4e-55	bHLH family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]