PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01062.70
Common NameJCGZ_15461, LOC105637071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 267aa    MW: 30260 Da    PI: 7.9991
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01062.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.6e-191156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll + v+++G ++W++I++ ++ gR++k+c++rw + 
    Jcr4S01062.70 11 KGPWSPEEDQLLQKFVQRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 56
                     79******************************.***********985 PP

2Myb_DNA-binding582.1e-1865107347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde++++a+++ G++ W+tIar ++ gRt++ +k++w++ 
    Jcr4S01062.70  65 PFTPEEDEIIINAHAKQGNK-WATIARLLN-GRTDNAIKNHWNST 107
                      89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.368661IPR017930Myb domain
SuperFamilySSF466892.0E-328104IPR009057Homeodomain-like
SMARTSM007172.4E-161059IPR001005SANT/Myb domain
PfamPF002493.7E-191156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-271264IPR009057Homeodomain-like
CDDcd001671.15E-151355No hitNo description
SMARTSM007172.5E-1562110IPR001005SANT/Myb domain
PROSITE profilePS5129421.12263112IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2465111IPR009057Homeodomain-like
PfamPF002491.9E-1565107IPR001005SANT/Myb domain
CDDcd001673.42E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDQQSIIDRV KGPWSPEEDQ LLQKFVQRHG ARNWSLISKS IPGRSGKSCR LRWCNQLSPE  60
VEHRPFTPEE DEIIINAHAK QGNKWATIAR LLNGRTDNAI KNHWNSTLKR KYSAAMSEDG  120
TTDRLQPPAR KFAKITSFCN SPSPSGSDVS DVGLPVTSSS SHHNQEQNLF HRRAGVMTTP  180
LSYQVESTPP RESETSNDDD LSTELTLSLP GKGFYGELLS RRESDSQELP IKCIEKTMTF  240
KPEFLTVMQE MIRKEVRNYM AGVEKDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-39101113104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-39101113104C-Myb DNA-Binding Domain
1msf_C2e-39101113104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346230.0KM034623.1 Jatropha curcas clone JcMYB003 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075857.20.0transcription factor MYB44
SwissprotO231602e-71MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A067LBP50.0A0A067LBP5_JATCU; MYB family protein
STRINGPOPTR_0009s09890.13e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-68myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]