PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01061.50

Common Name

JCGZ_15990

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRF

Protein Properties

Length: 605aa MW: 66015.2 Da PI: 8.0578

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01061.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	214	258	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Jcr4S01061.50 214 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 258 79****************************************986 PP
2	QLQ	62.6	1e-21	144	180	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k Jcr4S01061.50 144 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRK 180 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.5E-12	144	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.4E-16	145	179	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.066	145	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	214	258	IPR014977	WRC domain
Pfam	PF08879	2.2E-20	215	257	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MDFGVVGLEE LVGSDNVSSG FASLASSDRE TKQELYGSGF LKQERSDTTE HDWRSSKLSK 60 TESMLLPQRN TLLKSNTTDG HRQQQMLSFS CPKSEGLTVE RSPRNASFPS FHLSTSSAYN 120 RRTGYDYGSF NSSNMHGVFT EARGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIRK 180 ALDSAGFSSF SGGLLRPNTL PWGTFHLGFS NNTDPEPGRC RRTDGKKWRC SRDAVADQKY 240 CERHMNRGRH RSRKHVEGQT GHSAAAATTT TTAKQMSTAS SSVSASVVGI QSSSASNSLT 300 ITPHQHQKLK NLQPDSSSNL SATSPLSRMF LNKENLGERM QDSPSLSMPP SNINMKSREN 360 PFLNLEQQNS YQESSQIEFG LVNSDSLLNP SQNGSSLISR NFGSSKELIG QETISQHSVR 420 QFMDDWPKSQ CDQSAVSWPP LDVQSNRTQL SISIPIASAD FTSSTSTSNN EKIAPSPLRL 480 SCDLDSIKMG TGTGIILNEQ NQRHANWIPI PXXXGPLGEV LHNTNNTASE CKNSSALNLL 540 AEGWDCSPRL GSSPTGVLQK TTFHSLSNSS AGSSPRAENN KNTEGASLSN DLSPSLVHPS 600 SLSAL

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MDFGVVGLEE LVGSDNVSSG FASLASSDRE TKQELYGSGF LKQERSDTTE HDWRSSKLSK  60
TESMLLPQRN TLLKSNTTDG HRQQQMLSFS CPKSEGLTVE RSPRNASFPS FHLSTSSAYN  120
RRTGYDYGSF NSSNMHGVFT EARGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIRK  180
ALDSAGFSSF SGGLLRPNTL PWGTFHLGFS NNTDPEPGRC RRTDGKKWRC SRDAVADQKY  240
CERHMNRGRH RSRKHVEGQT GHSAAAATTT TTAKQMSTAS SSVSASVVGI QSSSASNSLT  300
ITPHQHQKLK NLQPDSSSNL SATSPLSRMF LNKENLGERM QDSPSLSMPP SNINMKSREN  360
PFLNLEQQNS YQESSQIEFG LVNSDSLLNP SQNGSSLISR NFGSSKELIG QETISQHSVR  420
QFMDDWPKSQ CDQSAVSWPP LDVQSNRTQL SISIPIASAD FTSSTSTSNN EKIAPSPLRL  480
SCDLDSIKMG TGTGIILNEQ NQRHANWIPI PXXXGPLGEV LHNTNNTASE CKNSSALNLL  540
AEGWDCSPRL GSSPTGVLQK TTFHSLSNSS AGSSPRAENN KNTEGASLSN DLSPSLVHPS  600
SLSAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM473368	4e-53	AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068389.1	0.0	uncharacterized protein LOC105631006
TrEMBL	A0A067L2X2	0.0	A0A067L2X2_JATCU; Uncharacterized protein
STRING	cassava4.1_003731m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-76	growth-regulating factor 2

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]