PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01061.40
Common NameJCGZ_15989
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRF
Protein Properties Length: 613aa    MW: 66348.4 Da    PI: 7.6195
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01061.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.21.4e-23219263145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCsr++++ +k+CErH++rgr+rsrk++e 
  Jcr4S01061.40 219 DPEPGRCRRTDGKKWRCSRDAVAVQKYCERHMNRGRHRSRKPVEG 263
                    79****************************************985 PP
2QLQ61.13e-21149185137
            QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                    ++F+++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k
  Jcr4S01061.40 149 GPFSPSQWMELEHQALIYKYITANVPIPSNLLIPIRK 185
                    59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.2E-12149185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.65150185IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-15150184IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.773219263IPR014977WRC domain
PfamPF088797.1E-20220262IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDFGVVGLEG LVAGSDTTGS SFASLASSDP ETKHKWYGSG FLKQERSGTT EDDWRSSKLS  60
KTESMLLPQR NTLLKSNATN LFPDGNQQQQ QQMLSFACPK SESLTVDRSS QNLTLPYFHL  120
TSAYNRNTGY NYGSFNSANM HGAFTEARGP FSPSQWMELE HQALIYKYIT ANVPIPSNLL  180
IPIRKALDSA GFSSFSGGLL RPNTLSWGTF HLGFSSNTDP EPGRCRRTDG KKWRCSRDAV  240
AVQKYCERHM NRGRHRSRKP VEGQSGHSAA AATTTTAKPM PSVSSTSSSL SASVVGLRGS  300
GGGSSNSLAI THHQQQLKNL QPDSSSNLSA AAPLSRMFLD QEKVGERLHD SPSLSMLSSN  360
IDMKSKENTF FISKGCSQIE FGLVNSDSLL NPSQNSSSLI SCRNFGSSQD LTDQETVSQH  420
SVRQFIDDWP KSQSDKSSVS WPQLDVQSDR TQLSISIPTI AHTDYMSSTS SPNNERVTLS  480
PLRLSRDLDP IQMGLGVGSV LNEQSQRQAN WIPISWENSM GGPLGEVLHN TNNSGSECKS  540
SSALNLMTEG WDNSPQIGSS PTGVLQKTTF ASLSNSSAGS SPRAENNKTN EGASLCNDLL  600
GSTLVHSSSL PAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068389.10.0uncharacterized protein LOC105631006
TrEMBLA0A067KZH20.0A0A067KZH2_JATCU; Uncharacterized protein
STRINGcassava4.1_003731m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-92growth-regulating factor 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]