PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01061.10
Common NameJCGZ_15986
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 648aa    MW: 71182.6 Da    PI: 6.7108
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01061.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.12.1e-08303347155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +kk g+   +          ++++lg ++ +e+Aa+a++ a++k++g
  Jcr4S01061.10 303 SQYRGVTSCKKEGQ--TR---K-----GRQVYLGGYDMEEKAARAYDLAALKYWG 347
                    67999998998887..22...2.....5*************************98 PP
2AP245.71.6e-14392441355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Jcr4S01061.10 392 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 441
                    9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.643277355IPR001471AP2/ERF domain
CDDcd000188.78E-15303355No hitNo description
SuperFamilySSF541711.96E-11303357IPR016177DNA-binding domain
SMARTSM003802.7E-16304361IPR001471AP2/ERF domain
PfamPF008475.4E-6307347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-10317356IPR001471AP2/ERF domain
CDDcd000181.28E-24390451No hitNo description
SuperFamilySSF541712.09E-17390450IPR016177DNA-binding domain
PROSITE profilePS5103219.177391449IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18391449IPR001471AP2/ERF domain
SMARTSM003801.2E-33391455IPR001471AP2/ERF domain
PfamPF008472.8E-9392441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MEVASSDPQH HHNQYHHEPE APSVAAVSVS SSVPTSFYLS TSHFNTPGIC YGVGESVGFH  60
SPLSVMPLKS DGSLCIMEAL TRSQSEGIVS SSSPKLEDFL GGATMENHQY SSHGRETMAL  120
SLDSMYYHQN TQPETNRQHS LDLHEPYRHQ ETHFSVQSHP YYNGIACHGM YQPPLEEQTK  180
DTHLSDCDSQ IPTMADDGMP CLKNWVARHY STHNALEQQI SNSLVDEGGA SGSVSALGCG  240
DLQSLSLSMS PGSQSSCVTA PRQISPTSTE CLAMETKKRG PSKVGHKQPV HRKSIDTFGQ  300
RTSQYRGVTS CKKEGQTRKG RQVYLGGYDM EEKAARAYDL AALKYWGPST HINFPLENYH  360
EELEEMKNMS RQEYVAHLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  420
TFSTQEEAAE AYDIAAIKFR GVNAVTNFDI TRYDVEKIMA SNTLLAGELA RKTKETETSS  480
GAIEYNPSAQ NSGETIPIEN SNGNGNDSDW KVVLYQSQQQ QQTNGCVDSL DQKSTSVGNY  540
RNSSYSMAMQ DLIGIDSLNS SQPLVNETNS RLGTHSSNTS SLVTSLSSSR EGSPDRTGTA  600
MLFAKPPLAS KFISPNSGVT PWFQSAAQLR PTAISMAHLP VFAAWNDT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068166.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-137CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A067LBU80.0A0A067LBU8_JATCU; Uncharacterized protein
STRINGcassava4.1_002957m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-133AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]