PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01040.60
Common NameJCGZ_04824, LOC105634179
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family BBR-BPC
Protein Properties Length: 275aa    MW: 30469.9 Da    PI: 10.275
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01040.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind334.33.2e-10212751301
      GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnklla 83 
                    mddd+ + rn+gyyep+  +k +lglqlmss+a+rd+k     r+ n  + + +aa+++rd         m++  rd++++             ++
  Jcr4S01040.60   1 MDDDALNMRNWGYYEPT--FKGHLGLQLMSSMADRDTKHflpgRDPNNIMVGASAAFHPRDcvvsdapvpMNY-VRDSWMSR------------VN 81 
                    9***9999*******99..************************999999************************.99****99............77 PP

      GAGA_bind  84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
                    +l+ +         ++ vl++t+s++slq      l+++    r+e    +  ie +++++ke ++ kkrq +  pk++kakk++k    +k++++
  Jcr4S01040.60  82 MLPPNP--------NYAVLPETSSAHSLQV-----LQPPNSS-RDE---RVARIE-EPNVNKEGSQLKKRQGGGAPKTPKAKKPRK----PKDNSN 155
                    777444........4899********9999.....5554444.222...234444.477888888899999999999999999999....333344 PP

      GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275
                    ++   +r+k  kks+d v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae
  Jcr4S01040.60 156 NAV--QRVKPAKKSMDGVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAE 249
                    444..689**************************************************************************************** PP

      GAGA_bind 276 GydlsnpvDLkdhWAkHGtnkfvtir 301
                    Gy+++np+DL++hWAkHGtnkfvtir
  Jcr4S01040.60 250 GYNFANPIDLRTHWAKHGTNKFVTIR 275
                    *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.1E-1771275IPR010409GAGA-binding transcriptional activator
PfamPF062174.0E-1121275IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDDDALNMRN WGYYEPTFKG HLGLQLMSSM ADRDTKHFLP GRDPNNIMVG ASAAFHPRDC  60
VVSDAPVPMN YVRDSWMSRV NMLPPNPNYA VLPETSSAHS LQVLQPPNSS RDERVARIEE  120
PNVNKEGSQL KKRQGGGAPK TPKAKKPRKP KDNSNNAVQR VKPAKKSMDG VINGIDMDIS  180
GIPIPVCSCT GTPQQCYRWG CGGWQSACCT TNVSMYPLPM STKRRGARIA GRKMSQGAFK  240
KVLEKLAAEG YNFANPIDLR THWAKHGTNK FVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072388.10.0protein BASIC PENTACYSTEINE2 isoform X2
SwissprotQ9SKD01e-108BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A067KPQ00.0A0A067KPQ0_JATCU; Uncharacterized protein
STRINGcassava4.1_034371m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-105basic pentacysteine 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]