PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01037.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NF-YA | ||||||||
Protein Properties | Length: 331aa MW: 36305.6 Da PI: 8.9017 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.9 | 6.9e-33 | 181 | 237 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl ksrkpylheSRh hAl+R RgsgGrF Jcr4S01037.20 181 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-VKSRKPYLHESRHLHALNRVRGSGGRF 237 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.7E-37 | 179 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.071 | 180 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.2E-24 | 183 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.8E-28 | 183 | 237 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 185 | 205 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.2E-24 | 214 | 237 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAVPIQNLPE KNFGQVPFAF NCPSWWYSNE QQNPVSVSRN ISFKVKPPHQ LYREGQNLGL 60 QLPDQESSSC QSIGKSHNEV GAMGESNSQD QCISSESGQD ENCTKGVGGR MKPVFLFSTP 120 EIALNPSQVD NCYSMARAPF PHADNYFGGL FTPYGPQTIL GSQMVGMTSA RVPLPLDLAD 180 DGPIYVNAKQ YHGILRRRQS RAKLEAQNKL VKSRKPYLHE SRHLHALNRV RGSGGRFLST 240 KRSQQPDPTS TSCTHGVSDT ISFHQKNEMS EREMCVSRAG QSGASNTTRS DITSVSSSDL 300 IFRQPDRRFS GMSTHIGGGM QTSGGLICSG T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-21 | 183 | 250 | 4 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077008.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_012077009.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_012077010.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_020536550.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_020536552.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_020536553.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A251IZS8 | 1e-180 | A0A251IZS8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011576m | 1e-180 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 7e-51 | nuclear factor Y, subunit A3 |