PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01026.10

Common Name

JCGZ_16908, WRKY34

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 543aa MW: 60939.6 Da PI: 5.1184

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01026.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.1e-30	262	321	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Jcr4S01026.10 262 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 321 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-32	247	323	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-27	255	323	IPR003657	WRKY domain
PROSITE profile	PS50811	28.988	257	323	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	262	322	IPR003657	WRKY domain
Pfam	PF03106	4.4E-27	263	321	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MGREEFKKMD IDLSLKIDTE DKEQEREEEE EEEEEEEEAK KAKEVQEMQE NSREKRPDVQ 60 EINDNEATPT ITGGEVVDDS SLELSLQENT KTEELSALQM EMNRMKEENK VLRKVVEQTM 120 KDYYDLQMKF AVIQQNTQKD PPIFLPLRGN EKAFEVPKSV PKFFDTNDNR NRATLSKDDK 180 IIEERELGLS LRLQNDDSDR QEREEDYKEE INKEENGNYA SVQNNKLQRT DNNLPGITSH 240 GASLPNRKAR VSVRARCQAA TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQV 300 QRCLEDMSIL ITTYEGTHNH PLPVGATAMA STASAAASFM LLDSSNPLSD NISNFTTQAS 360 NFPFRGASHM FYPNSMPFRS INPNDPSKGI VLDLTNNSTH QDHPPPQFAL ATSSSSPSHS 420 LAQPPPPMFS WMQNKSIHQN NGNSTIATNH FLASPRVDDH QRRWKSEEDK SSLAQNVTAI 480 ASDPKFRVAV AAAITSLINK EKGSVGPSLV PNDKESEGGS SSSKNWVLES LSANGKPIRN 540 SSP

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MGREEFKKMD IDLSLKIDTE DKEQEREEEE EEEEEEEEAK KAKEVQEMQE NSREKRPDVQ  60
EINDNEATPT ITGGEVVDDS SLELSLQENT KTEELSALQM EMNRMKEENK VLRKVVEQTM  120
KDYYDLQMKF AVIQQNTQKD PPIFLPLRGN EKAFEVPKSV PKFFDTNDNR NRATLSKDDK  180
IIEERELGLS LRLQNDDSDR QEREEDYKEE INKEENGNYA SVQNNKLQRT DNNLPGITSH  240
GASLPNRKAR VSVRARCQAA TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQV  300
QRCLEDMSIL ITTYEGTHNH PLPVGATAMA STASAAASFM LLDSSNPLSD NISNFTTQAS  360
NFPFRGASHM FYPNSMPFRS INPNDPSKGI VLDLTNNSTH QDHPPPQFAL ATSSSSPSHS  420
LAQPPPPMFS WMQNKSIHQN NGNSTIATNH FLASPRVDDH QRRWKSEEDK SSLAQNVTAI  480
ASDPKFRVAV AAAITSLINK EKGSVGPSLV PNDKESEGGS SSSKNWVLES LSANGKPIRN  540
SSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-22	249	325	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485286	0.0	KC485286.1 Jatropha curcas WRKY transcription factor 34 (WRKY34) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065723.1	0.0	probable WRKY transcription factor 9
Swissprot	Q9C9F0	7e-85	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	S5CKA9	0.0	S5CKA9_JATCU; WRKY transcription factor 34
STRING	XP_002527935.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9320	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	5e-77	WRKY DNA-binding protein 9

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]