PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01023.50
Common NameJCGZ_22381
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 243aa    MW: 27085.2 Da    PI: 4.3167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01023.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05101122223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C  C+++F++ ++L  H+r+H
  Jcr4S01023.50 101 VCAVCSRRFPSFYSLFGHLRSH 122
                    6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.078100127IPR007087Zinc finger, C2H2
PfamPF139125.6E-8102123IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDNNANDLEP EKPSEEQQIQ SHNNSPENAR EEDDNVTPIE TNAISPPRPV LETGASSTHG  60
SRKRRGRNND PGASLSMDGD NEERGDNRRR RKTVNAGVPA VCAVCSRRFP SFYSLFGHLR  120
SHTKRDWGGA FPPPVYNPDW GSKGDGEDDN DKPEQQSIAE TQKVMEHEVI PALLDVAKET  180
LAKMKQQEEE RIAELNVGSS RESELDLNVQ PQEDQENTEI NTTGLDLNLP PKEEEDEDAP  240
SFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021676881.11e-60uncharacterized protein LOC110662257
TrEMBLA0A067LHU01e-178A0A067LHU0_JATCU; Uncharacterized protein
STRINGcassava4.1_014273m2e-44(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2696933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.15e-10C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]