PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00993.50
Common NameJCGZ_06965, LOC105634538
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24538.2 Da    PI: 10.0087
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00993.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.3e-221663249
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   +i+ k   qvtfskRr+g++KKA+EL++LC++e+a+i+fs+ +k + +
  Jcr4S00993.50 16 KISKKNHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPANKAFSF 63
                   79999999**********************************997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-31766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.198767IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-26888IPR002100Transcription factor, MADS-box
CDDcd002652.83E-31877No hitNo description
PRINTSPR004044.0E-17929IPR002100Transcription factor, MADS-box
PfamPF003194.2E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVKRPSLGRQ KIAIEKISKK NHLQVTFSKR RAGLFKKASE LCTLCGVEIA IIVFSPANKA  60
FSFGHPEVES ILQKFLTRNP PPNSISHHLI EAHRNANVRE LNSQLTGIIN QLEKEKNKGE  120
ALNQIRKSSQ NQCWWESPID ELGLQELQYL RNALEELKKN VSKQVNKILL NSANSLPFLE  180
SNGIGCVKDF DTKPSVELNS VSSIGYVNNF GYEHRIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17792187MEF2C
5f28_B5e-17792187MEF2C
5f28_C5e-17792187MEF2C
5f28_D5e-17792187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072794.11e-158agamous-like MADS-box protein AGL61
SwissprotQ4PSU43e-52AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A067KN981e-156A0A067KN98_JATCU; Uncharacterized protein
STRINGPOPTR_0009s08740.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-54AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]