PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00969.70
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 418aa    MW: 44943.5 Da    PI: 5.0143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00969.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.1e-16164210455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Jcr4S00969.70 164 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 210
                    6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-17156214No hitNo description
Gene3DG3DSA:4.10.280.106.2E-20157220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-20157220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-13164210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGDIYNTCSS SSTGGDHRSS DEMSLFLHQI LHHSSSSSSS SMSSLTLSSC SSFAAYSGPQ  60
AQSFAAPLSF HPHHSSRSTL VKDGISGCLD SGDGVNVGLF SGNVRGAAAA TANASSLSIG  120
GTNSENETDC DCESEEGLEA LAEEVPAKPA PPRSSSKRSR AAEVHNLSEK RRRSRINEKM  180
KALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMLSMRN GISLHPMCLP GLLPPVQLSQ  240
LSRGFDEESG SQHMNIACSL PINQENQEQI IFDLPNQCSV SNQLSVPNII NSETSFGVDS  300
SIRAHFGPFP LRSSTEEICR EDVLPHHQLN ADHSERMPSG VYPMASTYIL FEFEMGAAAT  360
APLHFETQAS NLNGSNSLGT CMIGRDQSEX TGLLDMHPSS VSSTRTFDAL GDSHLEEN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020537312.10.0transcription factor SPATULA isoform X1
RefseqXP_020537313.10.0transcription factor SPATULA isoform X2
TrEMBLA0A067K6S90.0A0A067K6S9_JATCU; Uncharacterized protein
STRINGcassava4.1_020926m1e-170(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-51bHLH family protein