PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00967.10
Common NameJCGZ_20620, LOC105646052
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YC
Protein Properties Length: 136aa    MW: 15101.4 Da    PI: 8.2423
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00967.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC110.87.7e-35221031999
          NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                    h+lPlarikki+k + +dvkmis eaP+++skacelfi elt rsw+ + + krrtl+k d+a+av  tdifdflv+ v ++
  Jcr4S00967.10  22 HSLPLARIKKIMKkSGDDVKMISGEAPIVFSKACELFIKELTQRSWMVTMQGKRRTLHKEDVASAVIATDIFDFLVNLVDNN 103
                    99**********825689**********************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.79E-261796IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.4E-311987IPR009072Histone-fold
PfamPF008082.4E-212387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MRQAGTYSGL LCGGLSGRTG PHSLPLARIK KIMKKSGDDV KMISGEAPIV FSKACELFIK  60
ELTQRSWMVT MQGKRRTLHK EDVASAVIAT DIFDFLVNLV DNNHSTNNNS SMDKPQEIES  120
INDVVMHLPS TTEYLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-33221001693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087210.22e-99nuclear transcription factor Y subunit gamma
SwissprotQ655V52e-31NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A067K0Y67e-98A0A067K0Y6_JATCU; Uncharacterized protein
STRINGXP_002509772.15e-70(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.38e-34nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]