PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00963.50

Common Name

JCGZ_03406, LOC105632271

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 329aa MW: 36638.1 Da PI: 7.1302

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00963.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+++F + L H++ H Jcr4S00963.50 4 HKCKLCTRTFANGRALGGHMKAH 26 79******************998 PP
2	zf-C2H2	19.2	3.4e-06	224	245	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+k+F+++ L+ H r + Jcr4S00963.50 224 RCEKCSKVFRSSQALVAHKRIC 245 8******************987 PP
3	zf-C2H2	12.1	0.00062	263	285	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Jcr4S00963.50 263 FECPYCFKVFGSGQALGGHKRSH 285 89**************9999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.9E-6	3	27	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.45	4	31	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.056	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.40.10	2.6E-4	205	274	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50157	9.265	223	261	IPR007087	Zinc finger, C2H2
SMART	SM00355	14	223	243	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.95E-7	224	285	No hit	No description
Pfam	PF13912	5.5E-4	224	243	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.681	263	285	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.3E-11	263	285	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.15	263	285	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	265	285	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MERHKCKLCT RTFANGRALG GHMKAHLATL PLPPKTMSIQ QQPGNRTESA SSSYSSSGEE 60 QEIKNTEVEE KALVYGLREN PKKSFRFADP EFSFAIDAGS VVQDRESETE SRNPTRRRSK 120 RTRKSGFAEN QKLNFDFKKL KLKNPSLLES TSPSPSPSQS PSPSPAEPEP VSSVSDTSPE 180 EDVAMCLMML SRDVWLPNNE ELEQEQEEQE QEEIKANKIR GKLRCEKCSK VFRSSQALVA 240 HKRICSLNAT ELKKNHDGNE RIFECPYCFK VFGSGQALGG HKRSHLMGTS TTITALAENS 300 AKLEKSNSLI DLNLPAPVEE DDFSVVSDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	140	RRRSKRTRKSGFAENQKLNFDFKKLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012069986.1	0.0	zinc finger protein ZAT4
TrEMBL	A0A067L5V0	0.0	A0A067L5V0_JATCU; Uncharacterized protein
STRING	cassava4.1_034175m	1e-166	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF767	34	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	7e-32	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	105632271

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]