PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00957.50

Common Name

JCGZ_15137, LOC105644426

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 566aa MW: 61959.7 Da PI: 6.5893

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00957.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.8e-09	375	422	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Jcr4S00957.50 375 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 422 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-17	369	440	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-10	369	426	No hit	No description
PROSITE profile	PS50888	15.663	371	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	371	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-6	375	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	377	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MESEFFLNAG VPPPPLHFVP TSTIPTWPTL SSAIETQTNE LNSFSEQTPN SFFNANWEKS 60 TDQSLHFDSA LSSMVSSPAA SNSNISSDNF MIRELIGKLG NIGNGNNSGE ISPHSQPMLA 120 ASYNINNGGN NSTNTSCYST PLNSPPKLNR FPPKESLNFP NLGALNSSVA EFTADPGFAE 180 RAARFSCFGS RSFNGRTSQL GLNNAEFAFK CNNHPNPLMG NGKLPRVSSS PSLKAIGSQK 240 GNKNYSSSPL FDRSELGNSS QEENCSSVSE QTPNAEAATL KVPNELNSKK RKSVSKGKLK 300 ESQPANASKD AEIDETSNSK RSKSNEGSGN EKSSVKAEEE QKDEKQNKDN NNSKPPEPPK 360 DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS 420 LQRQVEFLSM KLASVNTRLD FNMDTLIPKD IFQSPIFPLD SSAPAIFGHQ PQQNPPLHSN 480 ISNGTVPQCS VGDPLDTALC QNFNMHLPPL DPFNHTIPQY PTFSEDDLQT IVQMGFRQNP 540 NSNQELPLQP QNFPGSSQAS HMKIEP

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MESEFFLNAG VPPPPLHFVP TSTIPTWPTL SSAIETQTNE LNSFSEQTPN SFFNANWEKS  60
TDQSLHFDSA LSSMVSSPAA SNSNISSDNF MIRELIGKLG NIGNGNNSGE ISPHSQPMLA  120
ASYNINNGGN NSTNTSCYST PLNSPPKLNR FPPKESLNFP NLGALNSSVA EFTADPGFAE  180
RAARFSCFGS RSFNGRTSQL GLNNAEFAFK CNNHPNPLMG NGKLPRVSSS PSLKAIGSQK  240
GNKNYSSSPL FDRSELGNSS QEENCSSVSE QTPNAEAATL KVPNELNSKK RKSVSKGKLK  300
ESQPANASKD AEIDETSNSK RSKSNEGSGN EKSSVKAEEE QKDEKQNKDN NNSKPPEPPK  360
DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS  420
LQRQVEFLSM KLASVNTRLD FNMDTLIPKD IFQSPIFPLD SSAPAIFGHQ PQQNPPLHSN  480
ISNGTVPQCS VGDPLDTALC QNFNMHLPPL DPFNHTIPQY PTFSEDDLQT IVQMGFRQNP  540
NSNQELPLQP QNFPGSSQAS HMKIEP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012085165.1	0.0	transcription factor bHLH62
TrEMBL	A0A067LA66	0.0	A0A067LA66_JATCU; Uncharacterized protein
STRING	cassava4.1_004576m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-106	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105644426

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]