PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00945.40
Common NameJCGZ_11683, LOC105640588
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 422aa    MW: 46689.3 Da    PI: 8.012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00945.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16239285455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Jcr4S00945.40 239 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 285
                    6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-18232305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-20238313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-14239285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.29E-16240289No hitNo description
SMARTSM003532.0E-17241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MINQCTVPKW NLKQQVRQEN VQAEESNKRS SHVDINHNLL QNLTSTTTQQ VPMSNDYEVA  60
ELTWENGQLA MHGLSGLLPS APRKPTWTGR TNETLESIVH QATSYQKHHK EEEVKIPAKV  120
ASTVASSDGK WAETSSANYQ AQMGPLLMKK RTRSESNLCG SSKDHEHVDR SACASACRDS  180
DTTMMTYASF DSAPSFKPKT TDEDSAASHG GSENQDDDQE TRTETVRSHS SKRSRAAAVH  240
NQSERRRRDR INQKMKALQK LVPNASKTDK ASMLDEVIEY LKQLQAQVQV MSVSRNMPHH  300
MMMMQQQQHH LHQMSLLARM GMAGVGLGMG MGMLDINSMP PQTISPPSLA AATAAPTYVG  360
PPPPPAVNHG SVPLPDPYCS FLAQSMNMDL YNKMAALYRQ QVNQNTQATS SPPQQSSHVQ  420
GD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080334.10.0transcription factor PIF7 isoform X1
TrEMBLA0A067K5B80.0A0A067K5B8_JATCU; Uncharacterized protein
STRINGXP_002514702.11e-153(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.11e-39phytochrome-interacting factor7
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]