PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00938.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 346aa    MW: 38791.8 Da    PI: 8.6495
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00938.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-1244100155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Jcr4S00938.40  44 SVYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 100
                    78*******************99998898888888********************98 PP
2AP251.32.9e-16137188155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Jcr4S00938.40 137 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 188
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1544108IPR016177DNA-binding domain
PfamPF008471.8E-844100IPR001471AP2/ERF domain
PROSITE profilePS5103218.6545108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1345109IPR001471AP2/ERF domain
SMARTSM003801.1E-1745114IPR001471AP2/ERF domain
PRINTSPR003673.8E-64657IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18137198IPR016177DNA-binding domain
CDDcd000183.61E-23137198No hitNo description
PfamPF008475.3E-12137188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17138197IPR001471AP2/ERF domain
SMARTSM003801.2E-24138202IPR001471AP2/ERF domain
PROSITE profilePS5103218.334138196IPR001471AP2/ERF domain
PRINTSPR003673.8E-6178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAKISQQSRR NTANSTNTNP TSTSTKPKRT RKTVPRDSPP QRSSVYRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QETILNFPRL KEMEGQSKEE  120
YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAATAYD  180
MAAIEYRGLN AVTNFDLSRY IKWLRPNSSQ QSPNSAADAN LIPNPTQELG LSFTSHQQSS  240
NSTETTVPPP WPNGRTGGSA SSALGLLLQS SKFKEMLERT SAGDCPLTPP ESEPRTPPSR  300
SFPDDIQTYF ECEDSGSFAI SDDDIIFGDL NTFASPIFDQ CCEFVG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067459.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-114AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2C9UNY00.0A0A2C9UNY0_MANES; Uncharacterized protein
STRINGcassava4.1_025233m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-92ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]