PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00921.50

Common Name

JCGZ_07219, LOC105637695

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 346aa MW: 40155.7 Da PI: 4.1883

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00921.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.7	2.6e-12	111	192	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e +L+e+ ++ +l+r++l+ +W ev++k+ ++ ++er+ +qCk+ ++ l+++ykk+k+ + ss++++f++++ Jcr4S00921.50 111 EWSEHEKFVLLEVWGDRFLQLGRNSLRSEDWTEVAEKVsESSKMERTEVQCKQMMDVLKRKYKKEKAKGPS-----SSKWAFFRKMD 192 5***********************************666789******************99987.....689*****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-20	110	194	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MVGFLQNPIL SIAQGKPLLY SHPVPSYYNH DYAVGEDDDE EFDEENDHEF DGNDIGDDYS 60 SRRYSHNFDE QNDDFGRYPK RQKLKSSVSN YEFVPRSGRL LSHGDDNFAP EWSEHEKFVL 120 LEVWGDRFLQ LGRNSLRSED WTEVAEKVSE SSKMERTEVQ CKQMMDVLKR KYKKEKAKGP 180 SSSKWAFFRK MDMLMKQELG GGSGFTLACG VDSGEYVFMD THVYLERANG NDEMRDSPCE 240 SEEEDEEEED REQSGTNEGV KGLRVLADSV EKFGEIYEKI ESSKREQMME LEKMRVDFQR 300 ELELQKKQIL ERAQAEIAKI REEEEDEDED TGDDDEDDDS GDDVTG

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MVGFLQNPIL SIAQGKPLLY SHPVPSYYNH DYAVGEDDDE EFDEENDHEF DGNDIGDDYS  60
SRRYSHNFDE QNDDFGRYPK RQKLKSSVSN YEFVPRSGRL LSHGDDNFAP EWSEHEKFVL  120
LEVWGDRFLQ LGRNSLRSED WTEVAEKVSE SSKMERTEVQ CKQMMDVLKR KYKKEKAKGP  180
SSSKWAFFRK MDMLMKQELG GGSGFTLACG VDSGEYVFMD THVYLERANG NDEMRDSPCE  240
SEEEDEEEED REQSGTNEGV KGLRVLADSV EKFGEIYEKI ESSKREQMME LEKMRVDFQR  300
ELELQKKQIL ERAQAEIAKI REEEEDEDED TGDDDEDDDS GDDVTG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076661.1	0.0	trihelix transcription factor ASIL2
Refseq	XP_012076662.1	0.0	trihelix transcription factor ASIL2
Refseq	XP_020536412.1	0.0	trihelix transcription factor ASIL2
Refseq	XP_020536413.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A067KF82	0.0	A0A067KF82_JATCU; Uncharacterized protein
STRING	cassava4.1_011306m	1e-139	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-84	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	105637695

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]