PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00909.50 | ||||||||
Common Name | JCGZ_02311, LOC105632116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 21314.8 Da PI: 5.1932 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.4 | 7e-10 | 72 | 120 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE+ RR+r+N++f+ L ++l + + + +K +iL A++ +++L Jcr4S00909.50 72 VTKACREKLRRERLNDRFHDLSSVLEPG---RPARTDKPAILDDAIRVLNQL 120 57889**********************8...789***************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-13 | 61 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.32E-7 | 67 | 125 | No hit | No description |
PROSITE profile | PS50888 | 13.071 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-7 | 73 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-9 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-11 | 75 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDSLEDGCCW DFLDYNFIDE TATSSDFLWH NNQSGDSAGG GVDIDFSSSG TVSEAKQFSR 60 KRGRSDSCSK PVTKACREKL RRERLNDRFH DLSSVLEPGR PARTDKPAIL DDAIRVLNQL 120 KTEAQELKET NQKLLEEIKS LKAEKNELRE EKLTLKADKE RMEQQLKVMA VPHGFMPAPS 180 SNLSYWGE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00372 | DAP | Transfer from AT3G23210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012069805.1 | 1e-128 | transcription factor bHLH104 | ||||
Swissprot | Q9LTC7 | 7e-60 | BH034_ARATH; Transcription factor bHLH34 | ||||
TrEMBL | A0A067KZD1 | 1e-127 | A0A067KZD1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_015883m | 5e-99 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23210.1 | 3e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105632116 |
Publications ? help Back to Top | |||
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