PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00906.40

Common Name

JCGZ_13441

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GeBP

Protein Properties

Length: 303aa MW: 34253.8 Da PI: 9.4237

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00906.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	80.4	2.8e-25	75	169	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +f+r+w+e Dei +LqGl+d + g s d+ fy++++k s +sksql+eK+rrL+kKf+ +++ ++g +ps+ ++hd++ f+ls+k+W Jcr4S00906.40 75 KFHRIWTEPDEIRFLQGLLDS-VSDGLSFPRDLPIFYRKFSKTTSHPYSKSQLSEKLRRLRKKFRVISSRLARGLNPSLLSPHDRSLFDLSNKLWS 169 699***************9.677999999**************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.8E-28	76	169	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDSTPLPEPE PEPETQPIFH QRLSPKSHSS SSSSASKLPI KRKTPFLLTT APSIVDPDST 60 SITTVDFDSK PPPFKFHRIW TEPDEIRFLQ GLLDSVSDGL SFPRDLPIFY RKFSKTTSHP 120 YSKSQLSEKL RRLRKKFRVI SSRLARGLNP SLLSPHDRSL FDLSNKLWSP EFASVSPFSA 180 NKTNSNDSNL IGVRVSFSPV LPVDFGPLDL DDGFDDGNII KTSEAREGKD CGVERSTVAK 240 SVLNVFDECL KEFQMVIARE SLRYSGDFKG FESRFREQRV AEMDVLAQRL RLVLENSVNR 300 QSK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077808.1	0.0	probable transcription factor At5g28040
TrEMBL	A0A067KAB0	0.0	A0A067KAB0_JATCU; Uncharacterized protein
STRING	cassava4.1_016122m	2e-86	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16541	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-18	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]