PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00902.30

Common Name

JCGZ_01336, LOC105646720

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 420aa MW: 46998.7 Da PI: 6.6391

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00902.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.1	2.1e-27	310	396	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ +e+++r+ g++ + W+evs+ m+ g++r++k+Ckekwen+nk+++k e+ +k++ e+s+tcpyf++l+ Jcr4S00902.30 310 RWPDTEVQALIMLRTALEQKFRAmGAKCSNIWDEVSAGMSNMGYNRTAKKCKEKWENINKYFRKSMESGGKKRHENSKTCPYFHELH 396 8*******************9466779******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-4	302	367	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.445	303	368	IPR017877	Myb-like domain
CDD	cd12203	2.05E-25	309	374	No hit	No description
Pfam	PF13837	1.4E-20	309	396	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MELLTGDRPV PNSTDFPQQI SPFPATGNLL ISNPMANIHS SDIDRQNLPP QKLRPIRANG 60 RSPSSSQIND LSLAAGLDGT LENLGLLADQ VCGINREACE YFKPPAKAEA SDVAVTGFGE 120 LRAPYLVEDS ETIGSGAGAG NQNPNSEGGA LVDEFSSSSD DDSSGAGMNE SARRKRKRKT 180 REKLENFLEN MVRQILQKQD QMHKQLIETM ERKELERIMR EEAWKQQEKE RRKRDEEVRA 240 QENARSLALI SFIQNVMGHK IEIPQSLTTE FPLAPQPLTT EFPLAASHGE KDGSSICIQS 300 DLKSDPSNRR WPDTEVQALI MLRTALEQKF RAMGAKCSNI WDEVSAGMSN MGYNRTAKKC 360 KEKWENINKY FRKSMESGGK KRHENSKTCP YFHELHILYK NGFVNPGNAN IENEANSSKE

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MELLTGDRPV PNSTDFPQQI SPFPATGNLL ISNPMANIHS SDIDRQNLPP QKLRPIRANG  60
RSPSSSQIND LSLAAGLDGT LENLGLLADQ VCGINREACE YFKPPAKAEA SDVAVTGFGE  120
LRAPYLVEDS ETIGSGAGAG NQNPNSEGGA LVDEFSSSSD DDSSGAGMNE SARRKRKRKT  180
REKLENFLEN MVRQILQKQD QMHKQLIETM ERKELERIMR EEAWKQQEKE RRKRDEEVRA  240
QENARSLALI SFIQNVMGHK IEIPQSLTTE FPLAPQPLTT EFPLAASHGE KDGSSICIQS  300
DLKSDPSNRR WPDTEVQALI MLRTALEQKF RAMGAKCSNI WDEVSAGMSN MGYNRTAKKC  360
KEKWENINKY FRKSMESGGK KRHENSKTCP YFHELHILYK NGFVNPGNAN IENEANSSKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	177	RRKRKR
2	172	178	RRKRKRK
3	173	178	RKRKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088032.1	0.0	trihelix transcription factor GTL1
TrEMBL	A0A067L8R1	0.0	A0A067L8R1_JATCU; Uncharacterized protein
STRING	cassava4.1_022038m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11112	33	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	1e-49	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	105646720

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]