PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00902.30 | ||||||||
Common Name | JCGZ_01336, LOC105646720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | Trihelix | ||||||||
Protein Properties | Length: 420aa MW: 46998.7 Da PI: 6.6391 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 87.1 | 2.1e-27 | 310 | 396 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ +e+++r+ g++ + W+evs+ m+ g++r++k+Ckekwen+nk+++k e+ +k++ e+s+tcpyf++l+ Jcr4S00902.30 310 RWPDTEVQALIMLRTALEQKFRAmGAKCSNIWDEVSAGMSNMGYNRTAKKCKEKWENINKYFRKSMESGGKKRHENSKTCPYFHELH 396 8*********************9466779********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-4 | 302 | 367 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.445 | 303 | 368 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.05E-25 | 309 | 374 | No hit | No description |
Pfam | PF13837 | 1.4E-20 | 309 | 396 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MELLTGDRPV PNSTDFPQQI SPFPATGNLL ISNPMANIHS SDIDRQNLPP QKLRPIRANG 60 RSPSSSQIND LSLAAGLDGT LENLGLLADQ VCGINREACE YFKPPAKAEA SDVAVTGFGE 120 LRAPYLVEDS ETIGSGAGAG NQNPNSEGGA LVDEFSSSSD DDSSGAGMNE SARRKRKRKT 180 REKLENFLEN MVRQILQKQD QMHKQLIETM ERKELERIMR EEAWKQQEKE RRKRDEEVRA 240 QENARSLALI SFIQNVMGHK IEIPQSLTTE FPLAPQPLTT EFPLAASHGE KDGSSICIQS 300 DLKSDPSNRR WPDTEVQALI MLRTALEQKF RAMGAKCSNI WDEVSAGMSN MGYNRTAKKC 360 KEKWENINKY FRKSMESGGK KRHENSKTCP YFHELHILYK NGFVNPGNAN IENEANSSKE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | RRKRKR |
2 | 172 | 178 | RRKRKRK |
3 | 173 | 178 | RKRKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012088032.1 | 0.0 | trihelix transcription factor GTL1 | ||||
TrEMBL | A0A067L8R1 | 0.0 | A0A067L8R1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_022038m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11112 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 1e-49 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105646720 |
Publications ? help Back to Top | |||
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