PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00894.30

Common Name

JCGZ_07540, LOC105638024

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 411aa MW: 43968.7 Da PI: 5.5021

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00894.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.7e-12	212	257	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ +K +Ka++L + +eY+k Lq Jcr4S00894.30 212 HSIAERLRREKIAERMKNLQELVPNS-----TKIDKASMLDEIIEYVKFLQ 257 99*********************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-16	205	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.34E-13	205	261	No hit	No description
PROSITE profile	PS50888	17.123	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-16	209	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	212	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-13	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MEEYINNILS SSSWVDGDSK EGQNCNHKPS ILNGCLKIGN VGLQYGSAIP ALGSVDLSYP 60 KQLQVVDEVG IDVGYSYNSS AIQNLSSIPQ LWPLASYDSV SSVSAVMGQD KMQQFSLHGG 120 SLEDETDFME KRYVCMDQIL QLDKLSEAVT TKDKKDMQSY PASAFAAGPN TTMASNGVSF 180 LSQTTSTAPA VECNGTGKPR VRARRGQATD PHSIAERLRR EKIAERMKNL QELVPNSTKI 240 DKASMLDEII EYVKFLQLQV KVLSMSRLGA AGAVIPLITD GQAEGSRSLS LSPSAGLGLE 300 VSPSPDQIAF EQEVLNLLES NVTTAIQYLQ SKGLCLMPIA LASAISSGKA SLSCGIACGE 360 KKSSFTNASA NSNRSDSPSS NCSKSTIANG CDGIVKQEKA FCRELKPNTL H

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MEEYINNILS SSSWVDGDSK EGQNCNHKPS ILNGCLKIGN VGLQYGSAIP ALGSVDLSYP  60
KQLQVVDEVG IDVGYSYNSS AIQNLSSIPQ LWPLASYDSV SSVSAVMGQD KMQQFSLHGG  120
SLEDETDFME KRYVCMDQIL QLDKLSEAVT TKDKKDMQSY PASAFAAGPN TTMASNGVSF  180
LSQTTSTAPA VECNGTGKPR VRARRGQATD PHSIAERLRR EKIAERMKNL QELVPNSTKI  240
DKASMLDEII EYVKFLQLQV KVLSMSRLGA AGAVIPLITD GQAEGSRSLS LSPSAGLGLE  300
VSPSPDQIAF EQEVLNLLES NVTTAIQYLQ SKGLCLMPIA LASAISSGKA SLSCGIACGE  360
KKSSFTNASA NSNRSDSPSS NCSKSTIANG CDGIVKQEKA FCRELKPNTL H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077119.1	0.0	uncharacterized protein LOC105638024
Refseq	XP_012077121.1	0.0	uncharacterized protein LOC105638024
Refseq	XP_012077122.1	0.0	uncharacterized protein LOC105638024
TrEMBL	A0A067KQ64	0.0	A0A067KQ64_JATCU; Uncharacterized protein
STRING	XP_002516201.1	1e-173	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15061	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	6e-57	LJRHL1-like 3

Link Out ? help Back to Top
Entrez Gene	105638024

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]