PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00892.10 | ||||||||
Common Name | JCGZ_21554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28341.4 Da PI: 9.3409 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1.1e-09 | 77 | 112 | 3 | 40 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsK 40 ++h+e+ErrRR+riN +++Lr l+P ++ k l K Jcr4S00892.10 77 KSHSEAERRRRERINAHLATLRGLVPCT--EKVKELKK 112 58************************96..24444666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.483 | 74 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-7 | 77 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-8 | 77 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.3E-8 | 78 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVSYCNYNAN SSSGIGYFNT LDPFSFRLQG FNGVLRDGSM VSQALVLDNE KGELVKAPVT 60 RVGKKVPSEA KALAALKSHS EAERRRRERI NAHLATLRGL VPCTEKVKEL KKKAIDASKG 120 LLIPMDDDEV KVETFDNGAE DGTLCFKASI CCDYRPELMY DIKQAVNALQ LKMVDVEIST 180 LGGQLKNVLF LTSYRKRKKN VTDDTETQQI LVNSIHQALN SVLEKGSISP EYSPRTTLPN 240 KRRRVTFFDA SSLSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 87 | ERRRRE |
2 | 194 | 198 | RKRKK |
3 | 240 | 244 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091752.2 | 1e-172 | transcription factor bHLH30 | ||||
TrEMBL | A0A067JE92 | 0.0 | A0A067JE92_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_025964m | 1e-114 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-27 | bHLH family protein |
Publications ? help Back to Top | |||
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