PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00891.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GeBP | ||||||||
Protein Properties | Length: 270aa MW: 29984.6 Da PI: 5.079 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 33.6 | 1.1e-10 | 149 | 192 | 2 | 43 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkk 43 lfqrlwse+Dei++L Gli++++k+g+ +d+d+ e+v k Jcr4S00891.70 149 LFQRLWSEDDEIAVLEGLIEYAEKKGAelGLGSDVDKEAEKVDK 192 79************************954445677777766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-7 | 150 | 195 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MGGKGRKRPV EKKKTEKEEE GSSSEEEETL TPIIKPPQAQ APKPAVKKPD STTQRAESDS 60 ESESDSDSED DGKATVKPIA SKPMEETPTK TTKSRSKPSA STSSVTKSIV AVKRVSEADR 120 DPKDSKRPKK KESESDGVVE KSEDTKKQLF QRLWSEDDEI AVLEGLIEYA EKKGAELGLG 180 SDVDKEAEKV DKKESHSGLK QISEFDKGVS VSGMEDFVVK RGLDMLDGAK KAEMEEKWRE 240 LHVAELELFL KRNELIREQA KLMLAAYKTE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077335.1 | 2e-80 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | A0A067LAY0 | 5e-79 | A0A067LAY0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_009078m | 3e-42 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01370.1 | 9e-08 | DNA-binding storekeeper protein-related transcriptional regulator |