PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00891.50 | ||||||||
Common Name | JCGZ_01235, LOC105648783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 18303 Da PI: 4.7762 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.1e-17 | 14 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +ykGVr++k +g+Wv+eIr+p g + +r +lg++ ++e Aa a++ a +l+g+ Jcr4S00891.50 14 KYKGVRRRK-WGKWVSEIRVP---G-TqRRLWLGSYSSPEAAAVAHDIASYCLRGH 64 8*****998.**********8...3.35**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.92E-26 | 13 | 75 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-17 | 14 | 74 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-25 | 14 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.036 | 14 | 73 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-10 | 14 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-26 | 14 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-8 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-8 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSGSRTTTTA ETAKYKGVRR RKWGKWVSEI RVPGTQRRLW LGSYSSPEAA AVAHDIASYC 60 LRGHSSIDSL NFPDLMLPAS VRGDMSPTSI QKAASDAGMA VDAQMIMNRV GSSDNEVNGN 120 EGSGNGAVLG SETEQLEWGD VGGDGGRGNW SGSGSQSGDS GDSLNISVED YYF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 21 | KGVRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090680.1 | 1e-120 | ethylene-responsive transcription factor ERF020 | ||||
Swissprot | Q9C9I8 | 5e-41 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A067LJD7 | 1e-119 | A0A067LJD7_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0013s10420.1 | 8e-62 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5489 | 30 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 3e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105648783 |
Publications ? help Back to Top | |||
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