PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00856.50

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 283aa MW: 31474.4 Da PI: 6.7755

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00856.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.1	1.5e-28	167	254	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Jcr4S00856.50 167 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 254 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-26	167	254	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MKGQRSYSTT ALLGKVVFEG VGDDGVADGG IVFEGEREAK CKFRARSTWH TNVKLTYATS 60 AAREAIWGKF EIGYPHILHF SSVEFGVNGD VNGVMLETVE LDSRAGDENE IGLNSIEEEF 120 QQDEDDKADT MSLGKDIIQD TVSSVAVVPD EPYVGQEFES EGAAHAFYNA YATRVGFIIR 180 VSKLSRSRRD GSAIGRALVC NKEGYRMPDK REKIVRQRAE TRVGCRAMIL VRKVSSGKWV 240 VTKFVKEHTH PLTPGKGRRD CIYDQYPVSS CSSVTQCWYC TNT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074748.1	1e-134	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A067KLA4	1e-133	A0A067KLA4_JATCU; Uncharacterized protein
STRING	cassava4.1_015077m	1e-101	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-73	FAR1 family protein