PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00855.110

Common Name

Dof1, JCGZ_19859, LOC105644078

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 518aa MW: 55717.2 Da PI: 6.1983

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00855.110	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.2e-39	147	207	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Jcr4S00855.110 147 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSG 207 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	145	204	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-32	149	205	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	151	205	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	153	189	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MSEPKDPAIK LFGKTIPLPE ISHGGTGTST ASAATSGGGS ISMDDDSQDQ DRPTCASSSL 60 EESNTKGGDG EERESDKDAG GETPLESKQE NGTPTVTAEE SSNPDAGISD NPKTSSVEKD 120 NSTSQTSKTE EEQSDTSNSQ EKTPKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN 180 CQRYWTAGGT MRNVPVGAGR RKNKNSGSHY RHITVSEALQ NVGTDIPNGV HHPALKSNGT 240 VLTFGSDTPL HESMASVLNL AEKTMQNSPR NGFHKPEALR IPVSYGGVGK GDDNSNGPSV 300 MASNSKDDAN KIGSQETMVR NGQSFQPQVP CFPGTPWPYP WNSAQWSSAT CLSPVTPPAF 360 CPPGFPMPFY PTAAYWGCTV PGTWNMPWIP QPSSPNQTAT QTATSSGPNS PTLGKHSRDE 420 NVQKPNNSGE EPGKENNAER CIWIPKTLRI DDPGEAAKSS IWTTLGITND KVDFVGGRGL 480 FKAFESKGDE KHRTTEASPL LNANPAALSR SLKFRESL

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MSEPKDPAIK LFGKTIPLPE ISHGGTGTST ASAATSGGGS ISMDDDSQDQ DRPTCASSSL  60
EESNTKGGDG EERESDKDAG GETPLESKQE NGTPTVTAEE SSNPDAGISD NPKTSSVEKD  120
NSTSQTSKTE EEQSDTSNSQ EKTPKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN  180
CQRYWTAGGT MRNVPVGAGR RKNKNSGSHY RHITVSEALQ NVGTDIPNGV HHPALKSNGT  240
VLTFGSDTPL HESMASVLNL AEKTMQNSPR NGFHKPEALR IPVSYGGVGK GDDNSNGPSV  300
MASNSKDDAN KIGSQETMVR NGQSFQPQVP CFPGTPWPYP WNSAQWSSAT CLSPVTPPAF  360
CPPGFPMPFY PTAAYWGCTV PGTWNMPWIP QPSSPNQTAT QTATSSGPNS PTLGKHSRDE  420
NVQKPNNSGE EPGKENNAER CIWIPKTLRI DDPGEAAKSS IWTTLGITND KVDFVGGRGL  480
FKAFESKGDE KHRTTEASPL LNANPAALSR SLKFRESL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022017	0.0	KF022017.1 Jatropha curcas DNA binding with one finger 1 (Dof1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001295631.1	0.0	cyclic dof factor 2
TrEMBL	D8UXL4	0.0	D8UXL4_JATCU; DNA binding with one finger 1
STRING	XP_002531852.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-106	cycling DOF factor 2

Link Out ? help Back to Top
Entrez Gene	105644078

Publications ? help Back to Top
Yang J,Yang MF,Zhang WP,Chen F,Shen SH A putative flowering-time-related Dof transcription factor gene, JcDof3, is controlled by the circadian clock in Jatropha curcas. Plant Sci., 2011. 181(6): p. 667-74 [PMID:21958709] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]