PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00851.20
Common NameJCGZ_19022, LOC105643562, WRKY23
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 334aa    MW: 37048.2 Da    PI: 7.2823
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00851.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.43.5e-34176234159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers+edp++v++tYeg+H+h+
  Jcr4S00851.20 176 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHTHP 234
                    59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381309.3E-10210332IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.804.6E-36161236IPR003657WRKY domain
SuperFamilySSF1182904.32E-30168236IPR003657WRKY domain
PROSITE profilePS5081133.556171236IPR003657WRKY domain
SMARTSM007746.3E-41176235IPR003657WRKY domain
PfamPF031061.5E-27177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MIKSGNSISM ANSTLMMSEE MPSSSNSLAL SSTVIPITSS TTTSSIFDIM PCDIGDKESL  60
SFMDLLDRNQ DFGPSLFDWF PAPIVPSQPL PSPASTVPES SEVLNAPATP NSSSISSSSN  120
EAVNNDAPAN KKPGEEEDQD QDQDKNKKQL KPKKKNQKRQ REPRFAFMTK SEVDHLDDGY  180
RWRKYGQKAV KNSPYPRSYY RCTSAGCGVK KRVERSSEDP TIVVTTYEGQ HTHPSPITPR  240
GSIAILQDSA AFATNSTFIV PQPHQYQQHQ HAYMYTSTPS LNISTTSPAF HSPSFSPSFH  300
QKRRFCPSTA SLFRDHGLLQ DIVPSQMRKE ATEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-281692361077Probable WRKY transcription factor 4
2lex_A2e-281692361077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852750.0KC485275.1 Jatropha curcas WRKY transcription factor 23 (WRKY23) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084106.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ42e-60WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLS5CFS20.0S5CFS2_JATCU; WRKY transcription factor 23
STRINGcassava4.1_011894m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-47WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]