PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00845.120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 1284aa MW: 145639 Da PI: 5.8867 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.2e-13 | 997 | 1042 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ vk++G+++W++I ++ + Rt+k+c++rw + Jcr4S00845.120 997 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 1042 79*************************8887799**********87 PP | |||||||
2 | Myb_DNA-binding | 37.9 | 4.1e-12 | 1053 | 1092 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +++ eE+ +++ +q+G++ W++Ia +++ gRt++++k++w Jcr4S00845.120 1053 KFSGEEERVVIELQAQFGNK-WAKIATYLP-GRTDNDVKNFW 1092 6888****************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50966 | 8.592 | 578 | 613 | IPR007527 | Zinc finger, SWIM-type |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 991 | 1045 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.702 | 992 | 1048 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.87E-27 | 995 | 1092 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-11 | 996 | 1046 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-10 | 999 | 1044 | No hit | No description |
Pfam | PF13921 | 2.9E-11 | 1000 | 1050 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-17 | 1046 | 1098 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.739 | 1049 | 1100 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-12 | 1050 | 1098 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-9 | 1053 | 1092 | No hit | No description |
Pfam | PF00249 | 1.8E-10 | 1053 | 1092 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1284 aa Download sequence Send to blast |
MAYVHAFQMA RWDEILSLPV QNPPTLEFSA TDLVWSKIEG WRDKIDRLAL IPFARVDDFV 60 RGESANKECP TRFHVEARRR RPSETSYKQK VDGILEYILY WCSFGPDDHR KGGIVRPSRS 120 VYVPKKKNAG RPNTKRGCTC HFIVKRLIAE PSVALIIYNQ DKHVDKKGLP CHGPQDKKAE 180 GTRAMFAPYI SEDLRLRVLS LLYVGVSVET IMQRHNESVE KQGGPCNRDD LLTHRYVRRQ 240 ERSIRRSTYE LDMDDAVSIS LWVECHQNNV FFYEDFSDSD PLTLGIQTEW QLQQMIRFGN 300 FSLLASDSRF GTNKLKYPVH SLVVFNSDKK AIPVAWIMTP RFATADAHKW MRALYNRVCT 360 KDPTFKLAGF IVDDPSTDIL TIRDVFQCPV LISFWRVRQA WHKNLLRRCS EIQMRAQIWK 420 RLGEAIDDIC RGPGSVDLFE VFMEDFVDCS DFMDYFKAVW YPRLGLWTHA LKNFPLASQE 480 TSAAIELYHN QLKVRLLNEK DPSVYQRADW LVDKLGTKVH SYFWLDEYSE KDEFARYWKD 540 EWDSGLTAWR KALKIPDLDV VMEGRCARVA DQLDRDRFHV VWNPRSNFAL CDCSWAEMGN 600 LCEHVFKVIR MSSNKGYRKP SISLSQYNQA LIDMLHCPPH DSLIRDHAVS LAVTVQKQLD 660 AMAVLDSSNS TAYPIQKQAV EILEQQTGDA DGRHLMDKDV SFHNTDDCGD RHEVSGGGVA 720 GDSAEPIGEK TTCAEMDVDQ SSNCIPVDEV VINDVFMENR DDSIKGPTLK DDALTDQIEL 780 ENDSVADTEL PSVDIPTSLV DFMGKCATNC DDVGDNGSEP LVITNTADAD NTSDKASVFL 840 ANSVEPQVIG MVATSGAVEN TVTEPESDNG SNADNHYPTD NVSSLNRLDD KETHNPDLSS 900 VGRMIMSESQ LNCLSTSSNS GKPHHMELTS QETNSHEKPS LRDKLSLISH THQTDVANGK 960 SDISQLDATN GIVPEGTASA PYSKQREMEA KRDEIRKGPW KAEEDEVLIN HVKKYGPRDW 1020 SSIRSKGLLQ RTGKSCRLRW VNKLRPNLKN GCKFSGEEER VVIELQAQFG NKWAKIATYL 1080 PGRTDNDVKN FWSSRQKRLA RILQTSATPS SSNTKPRKPR KEVSVFRDVP NLQRKNHPQR 1140 RSRARQAIWN APEPVRVLPL PYPFQAEAIK AELPDCDANL IDVDAQMQIP FPQIPQQQEQ 1200 PELTFSPESQ ELLARLGDPY LFNVFGAVDV PEIGAQLSLG PPFFDPVSSC MNGGREVRNP 1260 VTPDTFFDDF PTDMFDNIEP LPSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-27 | 994 | 1098 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP202871 | 0.0 | KP202871.1 Jatropha curcas MYB125 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083677.1 | 0.0 | uncharacterized protein LOC105643205 | ||||
TrEMBL | A0A067K1D1 | 0.0 | A0A067K1D1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_000877m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 7e-76 | MYB family protein |