PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00845.120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 1284aa    MW: 145639 Da    PI: 5.8867
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00845.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-139971042146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                       +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
   Jcr4S00845.120  997 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 1042
                       79*************************8887799**********87 PP

2Myb_DNA-binding37.94.1e-1210531092344
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                       +++ eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
   Jcr4S00845.120 1053 KFSGEEERVVIELQAQFGNK-WAKIATYLP-GRTDNDVKNFW 1092
                       6888****************.*********.*********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509668.592578613IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:1.10.10.601.1E-209911045IPR009057Homeodomain-like
PROSITE profilePS5129421.7029921048IPR017930Myb domain
SuperFamilySSF466893.87E-279951092IPR009057Homeodomain-like
SMARTSM007174.6E-119961046IPR001005SANT/Myb domain
CDDcd001671.54E-109991044No hitNo description
PfamPF139212.9E-1110001050No hitNo description
Gene3DG3DSA:1.10.10.606.8E-1710461098IPR009057Homeodomain-like
PROSITE profilePS5129417.73910491100IPR017930Myb domain
SMARTSM007176.1E-1210501098IPR001005SANT/Myb domain
CDDcd001673.28E-910531092No hitNo description
PfamPF002491.8E-1010531092IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1284 aa     Download sequence    Send to blast
MAYVHAFQMA RWDEILSLPV QNPPTLEFSA TDLVWSKIEG WRDKIDRLAL IPFARVDDFV  60
RGESANKECP TRFHVEARRR RPSETSYKQK VDGILEYILY WCSFGPDDHR KGGIVRPSRS  120
VYVPKKKNAG RPNTKRGCTC HFIVKRLIAE PSVALIIYNQ DKHVDKKGLP CHGPQDKKAE  180
GTRAMFAPYI SEDLRLRVLS LLYVGVSVET IMQRHNESVE KQGGPCNRDD LLTHRYVRRQ  240
ERSIRRSTYE LDMDDAVSIS LWVECHQNNV FFYEDFSDSD PLTLGIQTEW QLQQMIRFGN  300
FSLLASDSRF GTNKLKYPVH SLVVFNSDKK AIPVAWIMTP RFATADAHKW MRALYNRVCT  360
KDPTFKLAGF IVDDPSTDIL TIRDVFQCPV LISFWRVRQA WHKNLLRRCS EIQMRAQIWK  420
RLGEAIDDIC RGPGSVDLFE VFMEDFVDCS DFMDYFKAVW YPRLGLWTHA LKNFPLASQE  480
TSAAIELYHN QLKVRLLNEK DPSVYQRADW LVDKLGTKVH SYFWLDEYSE KDEFARYWKD  540
EWDSGLTAWR KALKIPDLDV VMEGRCARVA DQLDRDRFHV VWNPRSNFAL CDCSWAEMGN  600
LCEHVFKVIR MSSNKGYRKP SISLSQYNQA LIDMLHCPPH DSLIRDHAVS LAVTVQKQLD  660
AMAVLDSSNS TAYPIQKQAV EILEQQTGDA DGRHLMDKDV SFHNTDDCGD RHEVSGGGVA  720
GDSAEPIGEK TTCAEMDVDQ SSNCIPVDEV VINDVFMENR DDSIKGPTLK DDALTDQIEL  780
ENDSVADTEL PSVDIPTSLV DFMGKCATNC DDVGDNGSEP LVITNTADAD NTSDKASVFL  840
ANSVEPQVIG MVATSGAVEN TVTEPESDNG SNADNHYPTD NVSSLNRLDD KETHNPDLSS  900
VGRMIMSESQ LNCLSTSSNS GKPHHMELTS QETNSHEKPS LRDKLSLISH THQTDVANGK  960
SDISQLDATN GIVPEGTASA PYSKQREMEA KRDEIRKGPW KAEEDEVLIN HVKKYGPRDW  1020
SSIRSKGLLQ RTGKSCRLRW VNKLRPNLKN GCKFSGEEER VVIELQAQFG NKWAKIATYL  1080
PGRTDNDVKN FWSSRQKRLA RILQTSATPS SSNTKPRKPR KEVSVFRDVP NLQRKNHPQR  1140
RSRARQAIWN APEPVRVLPL PYPFQAEAIK AELPDCDANL IDVDAQMQIP FPQIPQQQEQ  1200
PELTFSPESQ ELLARLGDPY LFNVFGAVDV PEIGAQLSLG PPFFDPVSSC MNGGREVRNP  1260
VTPDTFFDDF PTDMFDNIEP LPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-27994109824126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2028710.0KP202871.1 Jatropha curcas MYB125 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083677.10.0uncharacterized protein LOC105643205
TrEMBLA0A067K1D10.0A0A067K1D1_JATCU; Uncharacterized protein
STRINGcassava4.1_000877m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.17e-76MYB family protein