PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00826.20 | ||||||||
Common Name | JCGZ_05687, LOC105628358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WOX | ||||||||
Protein Properties | Length: 212aa MW: 24018.2 Da PI: 9.5968 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.8e-20 | 19 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ Le l+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Jcr4S00826.20 19 SRWNPTKEQISLLEGLYRQgIRTPTADQIQQITARLkafgHIEGKNVFYWFQNHKARQRQ 78 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.6 | 5e-37 | 17 | 80 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt+eQi +Le ly++G+rtP++++iq+ita+L+++G+ie+kNVfyWFQN+kaR+rqkq Jcr4S00826.20 17 VNSRWNPTKEQISLLEGLYRQGIRTPTADQIQQITARLKAFGHIEGKNVFYWFQNHKARQRQKQ 80 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.835 | 14 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-12 | 14 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.7E-4 | 16 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.8E-18 | 19 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-8 | 19 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.56E-6 | 20 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MESENIEMGN SGSGAQVNSR WNPTKEQISL LEGLYRQGIR TPTADQIQQI TARLKAFGHI 60 EGKNVFYWFQ NHKARQRQKQ KQEIMGYNNI NRYLHKPHQP MFASPCTNVV CGSYYLPPID 120 LGFCPPYSKV LLPGSFKRKP RTEKIDQKAR TYACCAGYEP VMTQEYHNKN ISGNNYVNNQ 180 ETLPLFPLQP TGVLQGKAMI TASSSSSSFF GD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012065139.1 | 1e-156 | WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A067LI26 | 1e-154 | A0A067LI26_JATCU; Uncharacterized protein | ||||
STRING | XP_002531361.1 | 3e-92 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 1e-49 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 105628358 |
Publications ? help Back to Top | |||
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